miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24071 5' -53.7 NC_005262.1 + 38543 0.66 0.819459
Target:  5'- aGAGGcGgCGCAGGaGCCGGCGUug-Cg -3'
miRNA:   3'- -CUUUaCgGCGUCCaCGGCUGCGuuaG- -5'
24071 5' -53.7 NC_005262.1 + 6865 0.66 0.819459
Target:  5'- ----gGCCGUAGuccucggcgaUGCCGGcCGCGAUCg -3'
miRNA:   3'- cuuuaCGGCGUCc---------ACGGCU-GCGUUAG- -5'
24071 5' -53.7 NC_005262.1 + 3094 0.66 0.819459
Target:  5'- cGGuuUGCCGCAGuaGCCGcacACGCAGa- -3'
miRNA:   3'- -CUuuACGGCGUCcaCGGC---UGCGUUag -5'
24071 5' -53.7 NC_005262.1 + 19978 0.66 0.819459
Target:  5'- ----gGcCCGCGGccGUGUCGcCGCGAUCg -3'
miRNA:   3'- cuuuaC-GGCGUC--CACGGCuGCGUUAG- -5'
24071 5' -53.7 NC_005262.1 + 30904 0.66 0.809979
Target:  5'- ----cGCCGCcGGcuugGCCGACGU--UCg -3'
miRNA:   3'- cuuuaCGGCGuCCa---CGGCUGCGuuAG- -5'
24071 5' -53.7 NC_005262.1 + 34156 0.66 0.809979
Target:  5'- --cAUGCCGCucGcUGCCGAUGCcGGUUg -3'
miRNA:   3'- cuuUACGGCGucC-ACGGCUGCG-UUAG- -5'
24071 5' -53.7 NC_005262.1 + 27868 0.66 0.800307
Target:  5'- aGGAcgGCgGCaAGGcgGCCGAgCGCAAg- -3'
miRNA:   3'- -CUUuaCGgCG-UCCa-CGGCU-GCGUUag -5'
24071 5' -53.7 NC_005262.1 + 53546 0.66 0.800307
Target:  5'- ----cGCCGCGuaccccgagauGGUGCuCGGCGCGc-- -3'
miRNA:   3'- cuuuaCGGCGU-----------CCACG-GCUGCGUuag -5'
24071 5' -53.7 NC_005262.1 + 45874 0.66 0.800307
Target:  5'- ----cGCCGUuGGcGUCGGCGcCGAUCg -3'
miRNA:   3'- cuuuaCGGCGuCCaCGGCUGC-GUUAG- -5'
24071 5' -53.7 NC_005262.1 + 15320 0.66 0.800307
Target:  5'- ----cGCCGCccGUGCCcACGCGGcUCg -3'
miRNA:   3'- cuuuaCGGCGucCACGGcUGCGUU-AG- -5'
24071 5' -53.7 NC_005262.1 + 16569 0.66 0.790454
Target:  5'- ----gGCCGCGGaUGCCGA-GCAggCg -3'
miRNA:   3'- cuuuaCGGCGUCcACGGCUgCGUuaG- -5'
24071 5' -53.7 NC_005262.1 + 4801 0.66 0.78946
Target:  5'- cGGAGccgGCCGCGuagcgcuGGUuucGCCGGCGCGAc- -3'
miRNA:   3'- -CUUUa--CGGCGU-------CCA---CGGCUGCGUUag -5'
24071 5' -53.7 NC_005262.1 + 19395 0.66 0.780432
Target:  5'- uGGAUGCCGCccagAGGcuggaugaaugUGCCccCGCAGUCg -3'
miRNA:   3'- cUUUACGGCG----UCC-----------ACGGcuGCGUUAG- -5'
24071 5' -53.7 NC_005262.1 + 6354 0.66 0.780432
Target:  5'- ----cGCCGCGgcauccgcggacGGUGCCGgaGCGUuGUCg -3'
miRNA:   3'- cuuuaCGGCGU------------CCACGGC--UGCGuUAG- -5'
24071 5' -53.7 NC_005262.1 + 38954 0.67 0.774341
Target:  5'- ---cUGgCGCAGGgugaucggcacggcGCCGGcCGCGAUCg -3'
miRNA:   3'- cuuuACgGCGUCCa-------------CGGCU-GCGUUAG- -5'
24071 5' -53.7 NC_005262.1 + 13514 0.67 0.77025
Target:  5'- ----gGCCGUcacGGGcucgGCCGGCGCGggCg -3'
miRNA:   3'- cuuuaCGGCG---UCCa---CGGCUGCGUuaG- -5'
24071 5' -53.7 NC_005262.1 + 41552 0.67 0.77025
Target:  5'- -uGAUG-CGCAGGccgGCCGGCGUGggCg -3'
miRNA:   3'- cuUUACgGCGUCCa--CGGCUGCGUuaG- -5'
24071 5' -53.7 NC_005262.1 + 12518 0.67 0.759923
Target:  5'- cAGAUGCCGCG-----CGACGCGAUCg -3'
miRNA:   3'- cUUUACGGCGUccacgGCUGCGUUAG- -5'
24071 5' -53.7 NC_005262.1 + 10529 0.67 0.759923
Target:  5'- gGGGcgGCCGaaacGGcuaUGCCGACGCGAc- -3'
miRNA:   3'- -CUUuaCGGCgu--CC---ACGGCUGCGUUag -5'
24071 5' -53.7 NC_005262.1 + 2771 0.67 0.759923
Target:  5'- ----gGCgGCGGGUGCCGcauccuuguCGuCGAUCa -3'
miRNA:   3'- cuuuaCGgCGUCCACGGCu--------GC-GUUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.