Results 1 - 20 of 66 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24071 | 5' | -53.7 | NC_005262.1 | + | 2771 | 0.67 | 0.759923 |
Target: 5'- ----gGCgGCGGGUGCCGcauccuuguCGuCGAUCa -3' miRNA: 3'- cuuuaCGgCGUCCACGGCu--------GC-GUUAG- -5' |
|||||||
24071 | 5' | -53.7 | NC_005262.1 | + | 3094 | 0.66 | 0.819459 |
Target: 5'- cGGuuUGCCGCAGuaGCCGcacACGCAGa- -3' miRNA: 3'- -CUuuACGGCGUCcaCGGC---UGCGUUag -5' |
|||||||
24071 | 5' | -53.7 | NC_005262.1 | + | 4801 | 0.66 | 0.78946 |
Target: 5'- cGGAGccgGCCGCGuagcgcuGGUuucGCCGGCGCGAc- -3' miRNA: 3'- -CUUUa--CGGCGU-------CCA---CGGCUGCGUUag -5' |
|||||||
24071 | 5' | -53.7 | NC_005262.1 | + | 5190 | 0.68 | 0.684529 |
Target: 5'- ----gGgCGCGGGcgcgGCCGGCGCGAc- -3' miRNA: 3'- cuuuaCgGCGUCCa---CGGCUGCGUUag -5' |
|||||||
24071 | 5' | -53.7 | NC_005262.1 | + | 6354 | 0.66 | 0.780432 |
Target: 5'- ----cGCCGCGgcauccgcggacGGUGCCGgaGCGUuGUCg -3' miRNA: 3'- cuuuaCGGCGU------------CCACGGC--UGCGuUAG- -5' |
|||||||
24071 | 5' | -53.7 | NC_005262.1 | + | 6865 | 0.66 | 0.819459 |
Target: 5'- ----gGCCGUAGuccucggcgaUGCCGGcCGCGAUCg -3' miRNA: 3'- cuuuaCGGCGUCc---------ACGGCU-GCGUUAG- -5' |
|||||||
24071 | 5' | -53.7 | NC_005262.1 | + | 7612 | 0.7 | 0.562294 |
Target: 5'- cGGAUGCCGCAuGGUaGUCGGCGaucacggcguCGAUCa -3' miRNA: 3'- cUUUACGGCGU-CCA-CGGCUGC----------GUUAG- -5' |
|||||||
24071 | 5' | -53.7 | NC_005262.1 | + | 7662 | 0.7 | 0.562294 |
Target: 5'- ---uUGCUGUucGGGUcGCuCGGCGCGGUCg -3' miRNA: 3'- cuuuACGGCG--UCCA-CG-GCUGCGUUAG- -5' |
|||||||
24071 | 5' | -53.7 | NC_005262.1 | + | 10529 | 0.67 | 0.759923 |
Target: 5'- gGGGcgGCCGaaacGGcuaUGCCGACGCGAc- -3' miRNA: 3'- -CUUuaCGGCgu--CC---ACGGCUGCGUUag -5' |
|||||||
24071 | 5' | -53.7 | NC_005262.1 | + | 12518 | 0.67 | 0.759923 |
Target: 5'- cAGAUGCCGCG-----CGACGCGAUCg -3' miRNA: 3'- cUUUACGGCGUccacgGCUGCGUUAG- -5' |
|||||||
24071 | 5' | -53.7 | NC_005262.1 | + | 13514 | 0.67 | 0.77025 |
Target: 5'- ----gGCCGUcacGGGcucgGCCGGCGCGggCg -3' miRNA: 3'- cuuuaCGGCG---UCCa---CGGCUGCGUuaG- -5' |
|||||||
24071 | 5' | -53.7 | NC_005262.1 | + | 13687 | 0.68 | 0.673459 |
Target: 5'- ----cGCgCGC-GGUGCUGGCGCGugagGUCg -3' miRNA: 3'- cuuuaCG-GCGuCCACGGCUGCGU----UAG- -5' |
|||||||
24071 | 5' | -53.7 | NC_005262.1 | + | 15130 | 0.67 | 0.717386 |
Target: 5'- uGGAAUGCaCGCAucgcgGCCGGCGUcgAGUCg -3' miRNA: 3'- -CUUUACG-GCGUcca--CGGCUGCG--UUAG- -5' |
|||||||
24071 | 5' | -53.7 | NC_005262.1 | + | 15320 | 0.66 | 0.800307 |
Target: 5'- ----cGCCGCccGUGCCcACGCGGcUCg -3' miRNA: 3'- cuuuaCGGCGucCACGGcUGCGUU-AG- -5' |
|||||||
24071 | 5' | -53.7 | NC_005262.1 | + | 15738 | 0.69 | 0.617722 |
Target: 5'- ----cGCgGCAGGUGCgacCGACGCGc-- -3' miRNA: 3'- cuuuaCGgCGUCCACG---GCUGCGUuag -5' |
|||||||
24071 | 5' | -53.7 | NC_005262.1 | + | 16569 | 0.66 | 0.790454 |
Target: 5'- ----gGCCGCGGaUGCCGA-GCAggCg -3' miRNA: 3'- cuuuaCGGCGUCcACGGCUgCGUuaG- -5' |
|||||||
24071 | 5' | -53.7 | NC_005262.1 | + | 19395 | 0.66 | 0.780432 |
Target: 5'- uGGAUGCCGCccagAGGcuggaugaaugUGCCccCGCAGUCg -3' miRNA: 3'- cUUUACGGCG----UCC-----------ACGGcuGCGUUAG- -5' |
|||||||
24071 | 5' | -53.7 | NC_005262.1 | + | 19978 | 0.66 | 0.819459 |
Target: 5'- ----gGcCCGCGGccGUGUCGcCGCGAUCg -3' miRNA: 3'- cuuuaC-GGCGUC--CACGGCuGCGUUAG- -5' |
|||||||
24071 | 5' | -53.7 | NC_005262.1 | + | 20732 | 0.7 | 0.573298 |
Target: 5'- uGAAGcUGCCGCGgcgcgcGGUGCCGGCcgGGUCg -3' miRNA: 3'- -CUUU-ACGGCGU------CCACGGCUGcgUUAG- -5' |
|||||||
24071 | 5' | -53.7 | NC_005262.1 | + | 21059 | 0.75 | 0.29755 |
Target: 5'- --cGUGCCGUAGGcGCCGAgCGCGAc- -3' miRNA: 3'- cuuUACGGCGUCCaCGGCU-GCGUUag -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home