miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24072 5' -51.7 NC_005262.1 + 42877 0.66 0.913333
Target:  5'- cUCC-CCGAGCaacGCCGcgaGCUACGGGg -3'
miRNA:   3'- aAGGaGGCUUGga-UGGC---UGAUGUUCg -5'
24072 5' -51.7 NC_005262.1 + 43018 0.66 0.913333
Target:  5'- gUUCUUCGGccgcuACCUcGCCaGCUACGAGUa -3'
miRNA:   3'- aAGGAGGCU-----UGGA-UGGcUGAUGUUCG- -5'
24072 5' -51.7 NC_005262.1 + 10178 0.66 0.906719
Target:  5'- aUCCugaagUCCGuuACCUGCCGAgcgGCGAcGCg -3'
miRNA:   3'- aAGG-----AGGCu-UGGAUGGCUga-UGUU-CG- -5'
24072 5' -51.7 NC_005262.1 + 11697 0.66 0.899823
Target:  5'- -aCUUCgGAACCgagGCCGAgCUGCu-GCu -3'
miRNA:   3'- aaGGAGgCUUGGa--UGGCU-GAUGuuCG- -5'
24072 5' -51.7 NC_005262.1 + 19169 0.66 0.899823
Target:  5'- cUCCUCCcauGCCUugCG-C-GCGGGCu -3'
miRNA:   3'- aAGGAGGcu-UGGAugGCuGaUGUUCG- -5'
24072 5' -51.7 NC_005262.1 + 18578 0.66 0.899823
Target:  5'- gUUCaggCCGAGCCcggcggacaUGCCGcCUGCGAGg -3'
miRNA:   3'- -AAGga-GGCUUGG---------AUGGCuGAUGUUCg -5'
24072 5' -51.7 NC_005262.1 + 53347 0.66 0.899823
Target:  5'- -gCUUCCGcccGGCUUGCCGAgcauCUGCAuGCg -3'
miRNA:   3'- aaGGAGGC---UUGGAUGGCU----GAUGUuCG- -5'
24072 5' -51.7 NC_005262.1 + 58994 0.66 0.885196
Target:  5'- -gCCUcCCGcGCCgucgcgcuucgACCGuCUGCAAGCc -3'
miRNA:   3'- aaGGA-GGCuUGGa----------UGGCuGAUGUUCG- -5'
24072 5' -51.7 NC_005262.1 + 46057 0.66 0.885196
Target:  5'- gUCCgcCCGcuucACCgUGCCGACUACuuccGGCu -3'
miRNA:   3'- aAGGa-GGCu---UGG-AUGGCUGAUGu---UCG- -5'
24072 5' -51.7 NC_005262.1 + 21417 0.67 0.877475
Target:  5'- ---gUCCGAGCUcgcgacgGCCGACguccGCGAGCu -3'
miRNA:   3'- aaggAGGCUUGGa------UGGCUGa---UGUUCG- -5'
24072 5' -51.7 NC_005262.1 + 56279 0.67 0.877475
Target:  5'- -gCCgCCGAACCUGCCcGAUggaUGCGucGCg -3'
miRNA:   3'- aaGGaGGCUUGGAUGG-CUG---AUGUu-CG- -5'
24072 5' -51.7 NC_005262.1 + 59577 0.67 0.877475
Target:  5'- aUCCUCCaGAACaucgcGCgCGACUACGaucaGGCc -3'
miRNA:   3'- aAGGAGG-CUUGga---UG-GCUGAUGU----UCG- -5'
24072 5' -51.7 NC_005262.1 + 46798 0.67 0.869491
Target:  5'- --gCggCGAGCCgaugACCGACgUGCAGGCc -3'
miRNA:   3'- aagGagGCUUGGa---UGGCUG-AUGUUCG- -5'
24072 5' -51.7 NC_005262.1 + 45449 0.67 0.861251
Target:  5'- --gCUCgGAACCaucGCCGGC-GCGGGCa -3'
miRNA:   3'- aagGAGgCUUGGa--UGGCUGaUGUUCG- -5'
24072 5' -51.7 NC_005262.1 + 49959 0.67 0.852761
Target:  5'- -aCgUUCGAGCCgaucGCCGACgagACAgcGGCg -3'
miRNA:   3'- aaGgAGGCUUGGa---UGGCUGa--UGU--UCG- -5'
24072 5' -51.7 NC_005262.1 + 25930 0.67 0.852761
Target:  5'- -gCCUCCGGGCgcGCCGA-UGCAGGg -3'
miRNA:   3'- aaGGAGGCUUGgaUGGCUgAUGUUCg -5'
24072 5' -51.7 NC_005262.1 + 63733 0.67 0.84403
Target:  5'- cUUCUUCgCGAGCCgcggccuccCCGGCacauUGCAGGCa -3'
miRNA:   3'- -AAGGAG-GCUUGGau-------GGCUG----AUGUUCG- -5'
24072 5' -51.7 NC_005262.1 + 34432 0.67 0.84403
Target:  5'- aUUCCUCaCGAAgguUCUGCCGuucGCUcCGGGCu -3'
miRNA:   3'- -AAGGAG-GCUU---GGAUGGC---UGAuGUUCG- -5'
24072 5' -51.7 NC_005262.1 + 497 0.67 0.84403
Target:  5'- gUUCCacgucgacgCCGAGCCagcaGCCGGCcguCAAGCa -3'
miRNA:   3'- -AAGGa--------GGCUUGGa---UGGCUGau-GUUCG- -5'
24072 5' -51.7 NC_005262.1 + 11545 0.67 0.84403
Target:  5'- cUCCUUCGAuugcauuguagACgaUGCCGAUUGCGAcGCa -3'
miRNA:   3'- aAGGAGGCU-----------UGg-AUGGCUGAUGUU-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.