miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24073 3' -52.9 NC_005262.1 + 9761 0.65 0.896848
Target:  5'- cCGUGCGCucgauggugcuguaGGCGAG--CAGGuuGCCGu -3'
miRNA:   3'- -GCACGCG--------------CCGCUCuaGUUUuuCGGCc -5'
24073 3' -52.9 NC_005262.1 + 4813 0.66 0.891887
Target:  5'- aCG-GCGCGG-GAGG-CGuGAGGCCGc -3'
miRNA:   3'- -GCaCGCGCCgCUCUaGUuUUUCGGCc -5'
24073 3' -52.9 NC_005262.1 + 20751 0.66 0.891887
Target:  5'- gGUGC-CGGCcGGGUCGAuguacucguAGCUGGc -3'
miRNA:   3'- gCACGcGCCGcUCUAGUUuu-------UCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 54162 0.66 0.891887
Target:  5'- --aGaaCGGCGAGAUCGucAAGGcGCCGGu -3'
miRNA:   3'- gcaCgcGCCGCUCUAGU--UUUU-CGGCC- -5'
24073 3' -52.9 NC_005262.1 + 57560 0.66 0.891887
Target:  5'- cCGUgcGCGCGGCGGGcuUCAGcaucucGGCgGGc -3'
miRNA:   3'- -GCA--CGCGCCGCUCu-AGUUuu----UCGgCC- -5'
24073 3' -52.9 NC_005262.1 + 57281 0.66 0.884578
Target:  5'- gCGUGa-CGGCGAGGUCGGcgcGCUGa -3'
miRNA:   3'- -GCACgcGCCGCUCUAGUUuuuCGGCc -5'
24073 3' -52.9 NC_005262.1 + 49715 0.66 0.884578
Target:  5'- gCGUGCcggGCGGCGAaccggCGGccGAAGCCGc -3'
miRNA:   3'- -GCACG---CGCCGCUcua--GUU--UUUCGGCc -5'
24073 3' -52.9 NC_005262.1 + 6883 0.66 0.884578
Target:  5'- --aGCGCGGCcuuGAUCuc---GCCGGc -3'
miRNA:   3'- gcaCGCGCCGcu-CUAGuuuuuCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 41570 0.66 0.884578
Target:  5'- gCGUGgGCGGCGcGGccgugagcuuGUCGAGcgcGAGcCCGGc -3'
miRNA:   3'- -GCACgCGCCGC-UC----------UAGUUU---UUC-GGCC- -5'
24073 3' -52.9 NC_005262.1 + 21555 0.66 0.87701
Target:  5'- --aGCGCGGCGcucGGcAUCGGAaccgcGAGCgGGu -3'
miRNA:   3'- gcaCGCGCCGC---UC-UAGUUU-----UUCGgCC- -5'
24073 3' -52.9 NC_005262.1 + 22128 0.66 0.87701
Target:  5'- gGUGCcgGCGGCGAuGA-CGGcgccGCCGGa -3'
miRNA:   3'- gCACG--CGCCGCU-CUaGUUuuu-CGGCC- -5'
24073 3' -52.9 NC_005262.1 + 15553 0.66 0.869191
Target:  5'- aGUGCaGCcGCGAGAagCGAGagcaggagGAGCUGGa -3'
miRNA:   3'- gCACG-CGcCGCUCUa-GUUU--------UUCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 8918 0.66 0.865995
Target:  5'- gGUGCGCGGCGAaaagcgcccGAUUAuuugacccucGCgCGGg -3'
miRNA:   3'- gCACGCGCCGCU---------CUAGUuuuu------CG-GCC- -5'
24073 3' -52.9 NC_005262.1 + 45693 0.66 0.861128
Target:  5'- uCGUGCGCauCGAGggCcGGcAGCCGGc -3'
miRNA:   3'- -GCACGCGccGCUCuaGuUUuUCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 13537 0.67 0.852826
Target:  5'- gCGUGUGCaGCGGcAUCGA--GGCCGc -3'
miRNA:   3'- -GCACGCGcCGCUcUAGUUuuUCGGCc -5'
24073 3' -52.9 NC_005262.1 + 57058 0.67 0.852826
Target:  5'- aCGagGCGC-GCGAGAuguUCGAcAAGCaCGGg -3'
miRNA:   3'- -GCa-CGCGcCGCUCU---AGUUuUUCG-GCC- -5'
24073 3' -52.9 NC_005262.1 + 43133 0.67 0.852826
Target:  5'- aGUGCGCcu--GGAUCuguGAGGAGCCGGc -3'
miRNA:   3'- gCACGCGccgcUCUAG---UUUUUCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 14298 0.67 0.844294
Target:  5'- gCGuUGCGUGGaCGGGAgggcggCGGAaccgccGAGCUGGg -3'
miRNA:   3'- -GC-ACGCGCC-GCUCUa-----GUUU------UUCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 52555 0.67 0.83554
Target:  5'- gGUGCGCaGCGcGAUCGucgcugucGAGCuCGGc -3'
miRNA:   3'- gCACGCGcCGCuCUAGUuu------UUCG-GCC- -5'
24073 3' -52.9 NC_005262.1 + 17242 0.67 0.83554
Target:  5'- uCGUGgGCGucGCGGGAgCGGc-GGCCGGc -3'
miRNA:   3'- -GCACgCGC--CGCUCUaGUUuuUCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.