miRNA display CGI


Results 41 - 60 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24073 3' -52.9 NC_005262.1 + 58239 0.69 0.737952
Target:  5'- uCGUGCGUGGUGAcGAuccgcgcaUCGAGcacGAGCCa- -3'
miRNA:   3'- -GCACGCGCCGCU-CU--------AGUUU---UUCGGcc -5'
24073 3' -52.9 NC_005262.1 + 12121 0.69 0.716803
Target:  5'- cCGUGCGC-GCGAgcaGAUCGccgcgcugGAGAGCCaGGu -3'
miRNA:   3'- -GCACGCGcCGCU---CUAGU--------UUUUCGG-CC- -5'
24073 3' -52.9 NC_005262.1 + 23464 0.69 0.716803
Target:  5'- -aUGCGCGGCcuGGA-CGAAuGGCUGGg -3'
miRNA:   3'- gcACGCGCCGc-UCUaGUUUuUCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 13694 0.69 0.705023
Target:  5'- gGUGCugGCGcGUGAGGUCGAAGugccugacgugcuGGUCGGu -3'
miRNA:   3'- gCACG--CGC-CGCUCUAGUUUU-------------UCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 11200 0.69 0.706098
Target:  5'- uCGUGCGCGccaccuGCaAGAUCG-AGAGCCGc -3'
miRNA:   3'- -GCACGCGC------CGcUCUAGUuUUUCGGCc -5'
24073 3' -52.9 NC_005262.1 + 24952 0.69 0.716803
Target:  5'- --cGCGCGGCGcgcccAGcuUCAGGAacaGGCCGGc -3'
miRNA:   3'- gcaCGCGCCGC-----UCu-AGUUUU---UCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 49241 0.69 0.721063
Target:  5'- aGUcCGCGcGCGAGGUCcgcGAccagaucaacgagcuGAAGCCGGa -3'
miRNA:   3'- gCAcGCGC-CGCUCUAG---UU---------------UUUCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 60214 0.69 0.737952
Target:  5'- --nGC-CGGCGAGGUCGGcAAGCUGc -3'
miRNA:   3'- gcaCGcGCCGCUCUAGUUuUUCGGCc -5'
24073 3' -52.9 NC_005262.1 + 5290 0.69 0.737952
Target:  5'- uCGUGgucgaucaCGCGGuCGAGGcggUCGGAGcuGGCCGGc -3'
miRNA:   3'- -GCAC--------GCGCC-GCUCU---AGUUUU--UCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 33579 0.69 0.737952
Target:  5'- --gGC-CGGCGAGAUCAcgaucGAGGCCa- -3'
miRNA:   3'- gcaCGcGCCGCUCUAGUu----UUUCGGcc -5'
24073 3' -52.9 NC_005262.1 + 32180 0.69 0.706098
Target:  5'- --gGCgGCGGCGGcGG-CAGAAGGUCGGa -3'
miRNA:   3'- gcaCG-CGCCGCU-CUaGUUUUUCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 58345 0.68 0.768852
Target:  5'- gGUuCGCcGCGAGGUCAugccgcGCCGGg -3'
miRNA:   3'- gCAcGCGcCGCUCUAGUuuuu--CGGCC- -5'
24073 3' -52.9 NC_005262.1 + 36749 0.68 0.768852
Target:  5'- gCGUaGCGC-GUGAGGUCGAu-GGCgGGg -3'
miRNA:   3'- -GCA-CGCGcCGCUCUAGUUuuUCGgCC- -5'
24073 3' -52.9 NC_005262.1 + 30418 0.68 0.768852
Target:  5'- -cUGgGCGGCGucgacGAUCAc--GGCCGGc -3'
miRNA:   3'- gcACgCGCCGCu----CUAGUuuuUCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 1703 0.68 0.778886
Target:  5'- -uUGcCGCGGCggcgacgcauGAGGUCGAGAAGCUa- -3'
miRNA:   3'- gcAC-GCGCCG----------CUCUAGUUUUUCGGcc -5'
24073 3' -52.9 NC_005262.1 + 19099 0.68 0.778886
Target:  5'- uCGcGCGCGGCGAugccacguucgGAUCG---GGCgCGGg -3'
miRNA:   3'- -GCaCGCGCCGCU-----------CUAGUuuuUCG-GCC- -5'
24073 3' -52.9 NC_005262.1 + 59428 0.68 0.782859
Target:  5'- --aGCGCGGUGAGcuuUCAGGGgcuuacgaucgcgacGGCCGa -3'
miRNA:   3'- gcaCGCGCCGCUCu--AGUUUU---------------UCGGCc -5'
24073 3' -52.9 NC_005262.1 + 40481 0.68 0.792678
Target:  5'- uCGUGCGCGGCGccuuGAUgcgcuugauggcgaaCGAcgGGgCGGg -3'
miRNA:   3'- -GCACGCGCCGCu---CUA---------------GUUuuUCgGCC- -5'
24073 3' -52.9 NC_005262.1 + 23162 0.68 0.798491
Target:  5'- cCGUGCccGUGGcCGGGGUCGuuGAcGCCGu -3'
miRNA:   3'- -GCACG--CGCC-GCUCUAGUuuUU-CGGCc -5'
24073 3' -52.9 NC_005262.1 + 52393 0.68 0.808038
Target:  5'- cCG-GCGCGGCGcGGcuUCGGcguGGAGCCGc -3'
miRNA:   3'- -GCaCGCGCCGCuCU--AGUU---UUUCGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.