Results 81 - 96 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24073 | 3' | -52.9 | NC_005262.1 | + | 57058 | 0.67 | 0.852826 |
Target: 5'- aCGagGCGC-GCGAGAuguUCGAcAAGCaCGGg -3' miRNA: 3'- -GCa-CGCGcCGCUCU---AGUUuUUCG-GCC- -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 13537 | 0.67 | 0.852826 |
Target: 5'- gCGUGUGCaGCGGcAUCGA--GGCCGc -3' miRNA: 3'- -GCACGCGcCGCUcUAGUUuuUCGGCc -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 45693 | 0.66 | 0.861128 |
Target: 5'- uCGUGCGCauCGAGggCcGGcAGCCGGc -3' miRNA: 3'- -GCACGCGccGCUCuaGuUUuUCGGCC- -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 21555 | 0.66 | 0.87701 |
Target: 5'- --aGCGCGGCGcucGGcAUCGGAaccgcGAGCgGGu -3' miRNA: 3'- gcaCGCGCCGC---UC-UAGUUU-----UUCGgCC- -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 22128 | 0.66 | 0.87701 |
Target: 5'- gGUGCcgGCGGCGAuGA-CGGcgccGCCGGa -3' miRNA: 3'- gCACG--CGCCGCU-CUaGUUuuu-CGGCC- -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 20751 | 0.66 | 0.891887 |
Target: 5'- gGUGC-CGGCcGGGUCGAuguacucguAGCUGGc -3' miRNA: 3'- gCACGcGCCGcUCUAGUUuu-------UCGGCC- -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 6883 | 0.66 | 0.884578 |
Target: 5'- --aGCGCGGCcuuGAUCuc---GCCGGc -3' miRNA: 3'- gcaCGCGCCGcu-CUAGuuuuuCGGCC- -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 41570 | 0.66 | 0.884578 |
Target: 5'- gCGUGgGCGGCGcGGccgugagcuuGUCGAGcgcGAGcCCGGc -3' miRNA: 3'- -GCACgCGCCGC-UC----------UAGUUU---UUC-GGCC- -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 57281 | 0.66 | 0.884578 |
Target: 5'- gCGUGa-CGGCGAGGUCGGcgcGCUGa -3' miRNA: 3'- -GCACgcGCCGCUCUAGUUuuuCGGCc -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 4813 | 0.66 | 0.891887 |
Target: 5'- aCG-GCGCGG-GAGG-CGuGAGGCCGc -3' miRNA: 3'- -GCaCGCGCCgCUCUaGUuUUUCGGCc -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 57560 | 0.66 | 0.891887 |
Target: 5'- cCGUgcGCGCGGCGGGcuUCAGcaucucGGCgGGc -3' miRNA: 3'- -GCA--CGCGCCGCUCu-AGUUuu----UCGgCC- -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 54162 | 0.66 | 0.891887 |
Target: 5'- --aGaaCGGCGAGAUCGucAAGGcGCCGGu -3' miRNA: 3'- gcaCgcGCCGCUCUAGU--UUUU-CGGCC- -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 15553 | 0.66 | 0.869191 |
Target: 5'- aGUGCaGCcGCGAGAagCGAGagcaggagGAGCUGGa -3' miRNA: 3'- gCACG-CGcCGCUCUa-GUUU--------UUCGGCC- -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 8918 | 0.66 | 0.865995 |
Target: 5'- gGUGCGCGGCGAaaagcgcccGAUUAuuugacccucGCgCGGg -3' miRNA: 3'- gCACGCGCCGCU---------CUAGUuuuu------CG-GCC- -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 49715 | 0.66 | 0.884578 |
Target: 5'- gCGUGCcggGCGGCGAaccggCGGccGAAGCCGc -3' miRNA: 3'- -GCACG---CGCCGCUcua--GUU--UUUCGGCc -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 9761 | 0.65 | 0.896848 |
Target: 5'- cCGUGCGCucgauggugcuguaGGCGAG--CAGGuuGCCGu -3' miRNA: 3'- -GCACGCG--------------CCGCUCuaGUUUuuCGGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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