miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24073 3' -52.9 NC_005262.1 + 51711 1.11 0.00162
Target:  5'- uCGUGCGCGGCGAGAUCAAAAAGCCGGa -3'
miRNA:   3'- -GCACGCGCCGCUCUAGUUUUUCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 38429 0.78 0.259959
Target:  5'- cCG-GCGCGGuCGAGAUCAc---GCCGGa -3'
miRNA:   3'- -GCaCGCGCC-GCUCUAGUuuuuCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 13475 0.77 0.309965
Target:  5'- -cUGCGCGGCGGGcgCugc-GGCCGGc -3'
miRNA:   3'- gcACGCGCCGCUCuaGuuuuUCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 9533 0.76 0.333538
Target:  5'- -aUGCGCGGCGGGcuuaaccuaucUCAAGGAGCCGu -3'
miRNA:   3'- gcACGCGCCGCUCu----------AGUUUUUCGGCc -5'
24073 3' -52.9 NC_005262.1 + 35869 0.74 0.447238
Target:  5'- uGUGCGCGGCGAcgcgcgcaccuaucGGcUCAuccacGGGGCCGGc -3'
miRNA:   3'- gCACGCGCCGCU--------------CU-AGUu----UUUCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 60189 0.74 0.460054
Target:  5'- aGUGgGCGGCaaccggCAAGGAGCCGGc -3'
miRNA:   3'- gCACgCGCCGcucua-GUUUUUCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 36286 0.74 0.460054
Target:  5'- --cGCGCGGCGAcgcgaacaccucGGUCGAcuucgguggGGGGCCGGu -3'
miRNA:   3'- gcaCGCGCCGCU------------CUAGUU---------UUUCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 17053 0.73 0.480143
Target:  5'- cCG-GCGUGGCGGcGAUCGAuccggucguGCCGGa -3'
miRNA:   3'- -GCaCGCGCCGCU-CUAGUUuuu------CGGCC- -5'
24073 3' -52.9 NC_005262.1 + 56914 0.73 0.50065
Target:  5'- --cGC-CGGCGAGAUCAA--GGCCGc -3'
miRNA:   3'- gcaCGcGCCGCUCUAGUUuuUCGGCc -5'
24073 3' -52.9 NC_005262.1 + 20918 0.73 0.511048
Target:  5'- cCGUagcuCGCGGCGuuGcUCGGGGAGCCGGa -3'
miRNA:   3'- -GCAc---GCGCCGCucU-AGUUUUUCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 37290 0.72 0.532104
Target:  5'- aCGUGCGCGGCGAuccguUCAAGA--UCGGc -3'
miRNA:   3'- -GCACGCGCCGCUcu---AGUUUUucGGCC- -5'
24073 3' -52.9 NC_005262.1 + 24359 0.72 0.532104
Target:  5'- -cUGCGUGGCGAGGUaaucCGAGAgcaGGCCGc -3'
miRNA:   3'- gcACGCGCCGCUCUA----GUUUU---UCGGCc -5'
24073 3' -52.9 NC_005262.1 + 53843 0.72 0.542749
Target:  5'- cCG-GCGCGGCGcggacggcaagcAGAUCGcgcucAAGCCGGc -3'
miRNA:   3'- -GCaCGCGCCGC------------UCUAGUuu---UUCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 57460 0.72 0.553464
Target:  5'- --cGCgGCGGCGAcGAUggaggucgagggCGAGAAGCCGGc -3'
miRNA:   3'- gcaCG-CGCCGCU-CUA------------GUUUUUCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 57496 0.72 0.564241
Target:  5'- gCG-GC-CGGCGAGcgCAAGAAGgCGGc -3'
miRNA:   3'- -GCaCGcGCCGCUCuaGUUUUUCgGCC- -5'
24073 3' -52.9 NC_005262.1 + 21821 0.72 0.564241
Target:  5'- -cUGCGCGGCGGuGUCAGGcaacAGGCgCGGc -3'
miRNA:   3'- gcACGCGCCGCUcUAGUUU----UUCG-GCC- -5'
24073 3' -52.9 NC_005262.1 + 3730 0.72 0.575072
Target:  5'- uCGcGCGCGGCGuuGcgCAGGAugaacGCCGGg -3'
miRNA:   3'- -GCaCGCGCCGCu-CuaGUUUUu----CGGCC- -5'
24073 3' -52.9 NC_005262.1 + 58460 0.72 0.575072
Target:  5'- gCGUGCGCGGCG---UCAcGAcGUCGGa -3'
miRNA:   3'- -GCACGCGCCGCucuAGUuUUuCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 22170 0.71 0.61878
Target:  5'- --aGCuggaGGCGaAGGUCGAGAAGCUGGa -3'
miRNA:   3'- gcaCGcg--CCGC-UCUAGUUUUUCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 13987 0.71 0.61878
Target:  5'- --cGCGCGGCc-GAUCG---GGCCGGa -3'
miRNA:   3'- gcaCGCGCCGcuCUAGUuuuUCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.