miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24073 3' -52.9 NC_005262.1 + 13987 0.71 0.61878
Target:  5'- --cGCGCGGCc-GAUCG---GGCCGGa -3'
miRNA:   3'- gcaCGCGCCGcuCUAGUuuuUCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 51330 0.71 0.629759
Target:  5'- cCGcGCGCGGCaAGAUCGAAuccGCCa- -3'
miRNA:   3'- -GCaCGCGCCGcUCUAGUUUuu-CGGcc -5'
24073 3' -52.9 NC_005262.1 + 28955 0.7 0.651713
Target:  5'- uGUGCucGCGcGCGAGGaagUCGGGGAGCUGa -3'
miRNA:   3'- gCACG--CGC-CGCUCU---AGUUUUUCGGCc -5'
24073 3' -52.9 NC_005262.1 + 9244 0.7 0.651713
Target:  5'- gCGaaCGCGGCGAcGUCGcu-GGCCGGa -3'
miRNA:   3'- -GCacGCGCCGCUcUAGUuuuUCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 25548 0.7 0.662668
Target:  5'- cCGUGCGCGGCGGcacGAUCcacc-GCCu- -3'
miRNA:   3'- -GCACGCGCCGCU---CUAGuuuuuCGGcc -5'
24073 3' -52.9 NC_005262.1 + 49501 0.7 0.662668
Target:  5'- gGUGCGCGcaGCGcGAUCGccGAGGGCCu- -3'
miRNA:   3'- gCACGCGC--CGCuCUAGU--UUUUCGGcc -5'
24073 3' -52.9 NC_005262.1 + 6698 0.7 0.662668
Target:  5'- gCGUGcCGUGGaacauGAUCGGGAAGCCGc -3'
miRNA:   3'- -GCAC-GCGCCgcu--CUAGUUUUUCGGCc -5'
24073 3' -52.9 NC_005262.1 + 50296 0.7 0.662668
Target:  5'- cCGUGacgGCcGCGcGGAUUGAGGAGCCGGc -3'
miRNA:   3'- -GCACg--CGcCGC-UCUAGUUUUUCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 24892 0.7 0.673595
Target:  5'- gCGUGacaGGCGAGcUCGGccAGCCGGa -3'
miRNA:   3'- -GCACgcgCCGCUCuAGUUuuUCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 46746 0.7 0.673595
Target:  5'- cCGUGCGCGcGaCGAGcUCGcgGAGCUGc -3'
miRNA:   3'- -GCACGCGC-C-GCUCuAGUuuUUCGGCc -5'
24073 3' -52.9 NC_005262.1 + 61656 0.7 0.673595
Target:  5'- aGUGCuguaccGCGGCGcgcuGGAggcguUCAAGAAGCCGu -3'
miRNA:   3'- gCACG------CGCCGC----UCU-----AGUUUUUCGGCc -5'
24073 3' -52.9 NC_005262.1 + 47290 0.7 0.684483
Target:  5'- --cGcCGCGGCGaAGAUCGGcgaggcaaagcuGAAGCUGGc -3'
miRNA:   3'- gcaC-GCGCCGC-UCUAGUU------------UUUCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 6141 0.7 0.684483
Target:  5'- uGUGCGCGGcCGGGAUUuu---GCUGa -3'
miRNA:   3'- gCACGCGCC-GCUCUAGuuuuuCGGCc -5'
24073 3' -52.9 NC_005262.1 + 42482 0.7 0.695321
Target:  5'- aCGUGCGCguaGGUGGGGUUgguGAGcAGCCGc -3'
miRNA:   3'- -GCACGCG---CCGCUCUAG---UUUuUCGGCc -5'
24073 3' -52.9 NC_005262.1 + 13694 0.69 0.705023
Target:  5'- gGUGCugGCGcGUGAGGUCGAAGugccugacgugcuGGUCGGu -3'
miRNA:   3'- gCACG--CGC-CGCUCUAGUUUU-------------UCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 11200 0.69 0.706098
Target:  5'- uCGUGCGCGccaccuGCaAGAUCG-AGAGCCGc -3'
miRNA:   3'- -GCACGCGC------CGcUCUAGUuUUUCGGCc -5'
24073 3' -52.9 NC_005262.1 + 32180 0.69 0.706098
Target:  5'- --gGCgGCGGCGGcGG-CAGAAGGUCGGa -3'
miRNA:   3'- gcaCG-CGCCGCU-CUaGUUUUUCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 23839 0.69 0.716803
Target:  5'- --gGCGcCGGCGAGcgCAAGGAGagaGGg -3'
miRNA:   3'- gcaCGC-GCCGCUCuaGUUUUUCgg-CC- -5'
24073 3' -52.9 NC_005262.1 + 23464 0.69 0.716803
Target:  5'- -aUGCGCGGCcuGGA-CGAAuGGCUGGg -3'
miRNA:   3'- gcACGCGCCGc-UCUaGUUUuUCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 12121 0.69 0.716803
Target:  5'- cCGUGCGC-GCGAgcaGAUCGccgcgcugGAGAGCCaGGu -3'
miRNA:   3'- -GCACGCGcCGCU---CUAGU--------UUUUCGG-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.