miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24073 3' -52.9 NC_005262.1 + 16590 0.67 0.826573
Target:  5'- gCGUGUGCuGGuCGAGGcggCGAAGcAGCCGc -3'
miRNA:   3'- -GCACGCG-CC-GCUCUa--GUUUU-UCGGCc -5'
24073 3' -52.9 NC_005262.1 + 34979 0.67 0.826573
Target:  5'- --aGCGCGacGCGAGcUCGAGAuGCgCGGg -3'
miRNA:   3'- gcaCGCGC--CGCUCuAGUUUUuCG-GCC- -5'
24073 3' -52.9 NC_005262.1 + 50403 0.67 0.823843
Target:  5'- --cGCGCGGCGA--UCAgcgccgcggagcgcGAGGGCCGc -3'
miRNA:   3'- gcaCGCGCCGCUcuAGU--------------UUUUCGGCc -5'
24073 3' -52.9 NC_005262.1 + 48503 0.67 0.821095
Target:  5'- -aUGCGCGGCGAaucgacgacugGcagcauccaugccgcGUCGAAgugcAGGCCGGg -3'
miRNA:   3'- gcACGCGCCGCU-----------C---------------UAGUUU----UUCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 52451 0.67 0.816475
Target:  5'- aCGUGcCGCGcGCGAGcggcGUCuugcggaGGAGGGCCGa -3'
miRNA:   3'- -GCAC-GCGC-CGCUC----UAG-------UUUUUCGGCc -5'
24073 3' -52.9 NC_005262.1 + 6640 0.68 0.808038
Target:  5'- uGUGCgGCGGCGcuucGAUCGcGucGCCGu -3'
miRNA:   3'- gCACG-CGCCGCu---CUAGUuUuuCGGCc -5'
24073 3' -52.9 NC_005262.1 + 52393 0.68 0.808038
Target:  5'- cCG-GCGCGGCGcGGcuUCGGcguGGAGCCGc -3'
miRNA:   3'- -GCaCGCGCCGCuCU--AGUU---UUUCGGCc -5'
24073 3' -52.9 NC_005262.1 + 23162 0.68 0.798491
Target:  5'- cCGUGCccGUGGcCGGGGUCGuuGAcGCCGu -3'
miRNA:   3'- -GCACG--CGCC-GCUCUAGUuuUU-CGGCc -5'
24073 3' -52.9 NC_005262.1 + 49854 0.68 0.798491
Target:  5'- gGUGCcgGCGGCGguaccGGAagcagcUCAGccGGCCGGa -3'
miRNA:   3'- gCACG--CGCCGC-----UCU------AGUUuuUCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 44177 0.68 0.798491
Target:  5'- --cGCgGCGGCGAGcUCAAu--GCCGu -3'
miRNA:   3'- gcaCG-CGCCGCUCuAGUUuuuCGGCc -5'
24073 3' -52.9 NC_005262.1 + 40481 0.68 0.792678
Target:  5'- uCGUGCGCGGCGccuuGAUgcgcuugauggcgaaCGAcgGGgCGGg -3'
miRNA:   3'- -GCACGCGCCGCu---CUA---------------GUUuuUCgGCC- -5'
24073 3' -52.9 NC_005262.1 + 19284 0.68 0.78877
Target:  5'- --aGCGCGGCGA--UCA---GGCUGGc -3'
miRNA:   3'- gcaCGCGCCGCUcuAGUuuuUCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 38544 0.68 0.78877
Target:  5'- gGU-CGCGGUGAcGAUCGGcaccgccgcGGGCCGGa -3'
miRNA:   3'- gCAcGCGCCGCU-CUAGUUu--------UUCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 27727 0.68 0.78877
Target:  5'- aGUGguCGCaGGaCGAGAUCGAcGAGCUGa -3'
miRNA:   3'- gCAC--GCG-CC-GCUCUAGUUuUUCGGCc -5'
24073 3' -52.9 NC_005262.1 + 59428 0.68 0.782859
Target:  5'- --aGCGCGGUGAGcuuUCAGGGgcuuacgaucgcgacGGCCGa -3'
miRNA:   3'- gcaCGCGCCGCUCu--AGUUUU---------------UCGGCc -5'
24073 3' -52.9 NC_005262.1 + 17122 0.68 0.782859
Target:  5'- --cGCGCGGCGAuggaccacaaGAacgcgcgcgucgcaaUCgAGAAGGCCGGc -3'
miRNA:   3'- gcaCGCGCCGCU----------CU---------------AG-UUUUUCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 58901 0.68 0.778886
Target:  5'- --cGCGCuGCGcGAUCA---GGCCGGc -3'
miRNA:   3'- gcaCGCGcCGCuCUAGUuuuUCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 50777 0.68 0.778886
Target:  5'- --gGUGCGGUucGAGAUCA---AGCCGa -3'
miRNA:   3'- gcaCGCGCCG--CUCUAGUuuuUCGGCc -5'
24073 3' -52.9 NC_005262.1 + 29885 0.68 0.778886
Target:  5'- --cGCGCGGCGcu-UCAGGAAGaugaCGGu -3'
miRNA:   3'- gcaCGCGCCGCucuAGUUUUUCg---GCC- -5'
24073 3' -52.9 NC_005262.1 + 19099 0.68 0.778886
Target:  5'- uCGcGCGCGGCGAugccacguucgGAUCG---GGCgCGGg -3'
miRNA:   3'- -GCaCGCGCCGCU-----------CUAGUuuuUCG-GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.