miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24073 3' -52.9 NC_005262.1 + 1703 0.68 0.778886
Target:  5'- -uUGcCGCGGCggcgacgcauGAGGUCGAGAAGCUa- -3'
miRNA:   3'- gcAC-GCGCCG----------CUCUAGUUUUUCGGcc -5'
24073 3' -52.9 NC_005262.1 + 3730 0.72 0.575072
Target:  5'- uCGcGCGCGGCGuuGcgCAGGAugaacGCCGGg -3'
miRNA:   3'- -GCaCGCGCCGCu-CuaGUUUUu----CGGCC- -5'
24073 3' -52.9 NC_005262.1 + 4659 0.69 0.716803
Target:  5'- --cGCGCGGCGAcg-CGGcccGGCCGGu -3'
miRNA:   3'- gcaCGCGCCGCUcuaGUUuu-UCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 4813 0.66 0.891887
Target:  5'- aCG-GCGCGG-GAGG-CGuGAGGCCGc -3'
miRNA:   3'- -GCaCGCGCCgCUCUaGUuUUUCGGCc -5'
24073 3' -52.9 NC_005262.1 + 5290 0.69 0.737952
Target:  5'- uCGUGgucgaucaCGCGGuCGAGGcggUCGGAGcuGGCCGGc -3'
miRNA:   3'- -GCAC--------GCGCC-GCUCU---AGUUUU--UCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 6141 0.7 0.684483
Target:  5'- uGUGCGCGGcCGGGAUUuu---GCUGa -3'
miRNA:   3'- gCACGCGCC-GCUCUAGuuuuuCGGCc -5'
24073 3' -52.9 NC_005262.1 + 6212 0.71 0.61878
Target:  5'- cCGUGCGCca-GAGGUCAuccGGAGCCGc -3'
miRNA:   3'- -GCACGCGccgCUCUAGUu--UUUCGGCc -5'
24073 3' -52.9 NC_005262.1 + 6640 0.68 0.808038
Target:  5'- uGUGCgGCGGCGcuucGAUCGcGucGCCGu -3'
miRNA:   3'- gCACG-CGCCGCu---CUAGUuUuuCGGCc -5'
24073 3' -52.9 NC_005262.1 + 6698 0.7 0.662668
Target:  5'- gCGUGcCGUGGaacauGAUCGGGAAGCCGc -3'
miRNA:   3'- -GCAC-GCGCCgcu--CUAGUUUUUCGGCc -5'
24073 3' -52.9 NC_005262.1 + 6883 0.66 0.884578
Target:  5'- --aGCGCGGCcuuGAUCuc---GCCGGc -3'
miRNA:   3'- gcaCGCGCCGcu-CUAGuuuuuCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 8918 0.66 0.865995
Target:  5'- gGUGCGCGGCGAaaagcgcccGAUUAuuugacccucGCgCGGg -3'
miRNA:   3'- gCACGCGCCGCU---------CUAGUuuuu------CG-GCC- -5'
24073 3' -52.9 NC_005262.1 + 9244 0.7 0.651713
Target:  5'- gCGaaCGCGGCGAcGUCGcu-GGCCGGa -3'
miRNA:   3'- -GCacGCGCCGCUcUAGUuuuUCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 9533 0.76 0.333538
Target:  5'- -aUGCGCGGCGGGcuuaaccuaucUCAAGGAGCCGu -3'
miRNA:   3'- gcACGCGCCGCUCu----------AGUUUUUCGGCc -5'
24073 3' -52.9 NC_005262.1 + 9761 0.65 0.896848
Target:  5'- cCGUGCGCucgauggugcuguaGGCGAG--CAGGuuGCCGu -3'
miRNA:   3'- -GCACGCG--------------CCGCUCuaGUUUuuCGGCc -5'
24073 3' -52.9 NC_005262.1 + 11200 0.69 0.706098
Target:  5'- uCGUGCGCGccaccuGCaAGAUCG-AGAGCCGc -3'
miRNA:   3'- -GCACGCGC------CGcUCUAGUuUUUCGGCc -5'
24073 3' -52.9 NC_005262.1 + 12121 0.69 0.716803
Target:  5'- cCGUGCGC-GCGAgcaGAUCGccgcgcugGAGAGCCaGGu -3'
miRNA:   3'- -GCACGCGcCGCU---CUAGU--------UUUUCGG-CC- -5'
24073 3' -52.9 NC_005262.1 + 13475 0.77 0.309965
Target:  5'- -cUGCGCGGCGGGcgCugc-GGCCGGc -3'
miRNA:   3'- gcACGCGCCGCUCuaGuuuuUCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 13537 0.67 0.852826
Target:  5'- gCGUGUGCaGCGGcAUCGA--GGCCGc -3'
miRNA:   3'- -GCACGCGcCGCUcUAGUUuuUCGGCc -5'
24073 3' -52.9 NC_005262.1 + 13694 0.69 0.705023
Target:  5'- gGUGCugGCGcGUGAGGUCGAAGugccugacgugcuGGUCGGu -3'
miRNA:   3'- gCACG--CGC-CGCUCUAGUUUU-------------UCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 13987 0.71 0.61878
Target:  5'- --cGCGCGGCc-GAUCG---GGCCGGa -3'
miRNA:   3'- gcaCGCGCCGcuCUAGUuuuUCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.