miRNA display CGI


Results 41 - 60 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24073 3' -52.9 NC_005262.1 + 24952 0.69 0.716803
Target:  5'- --cGCGCGGCGcgcccAGcuUCAGGAacaGGCCGGc -3'
miRNA:   3'- gcaCGCGCCGC-----UCu-AGUUUU---UCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 25548 0.7 0.662668
Target:  5'- cCGUGCGCGGCGGcacGAUCcacc-GCCu- -3'
miRNA:   3'- -GCACGCGCCGCU---CUAGuuuuuCGGcc -5'
24073 3' -52.9 NC_005262.1 + 27727 0.68 0.78877
Target:  5'- aGUGguCGCaGGaCGAGAUCGAcGAGCUGa -3'
miRNA:   3'- gCAC--GCG-CC-GCUCUAGUUuUUCGGCc -5'
24073 3' -52.9 NC_005262.1 + 28955 0.7 0.651713
Target:  5'- uGUGCucGCGcGCGAGGaagUCGGGGAGCUGa -3'
miRNA:   3'- gCACG--CGC-CGCUCU---AGUUUUUCGGCc -5'
24073 3' -52.9 NC_005262.1 + 29885 0.68 0.778886
Target:  5'- --cGCGCGGCGcu-UCAGGAAGaugaCGGu -3'
miRNA:   3'- gcaCGCGCCGCucuAGUUUUUCg---GCC- -5'
24073 3' -52.9 NC_005262.1 + 30418 0.68 0.768852
Target:  5'- -cUGgGCGGCGucgacGAUCAc--GGCCGGc -3'
miRNA:   3'- gcACgCGCCGCu----CUAGUuuuUCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 32180 0.69 0.706098
Target:  5'- --gGCgGCGGCGGcGG-CAGAAGGUCGGa -3'
miRNA:   3'- gcaCG-CGCCGCU-CUaGUUUUUCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 32193 0.69 0.737952
Target:  5'- gGUGCaCGGaGAGGUCGAAGGugaugcgaucGCCGGc -3'
miRNA:   3'- gCACGcGCCgCUCUAGUUUUU----------CGGCC- -5'
24073 3' -52.9 NC_005262.1 + 33579 0.69 0.737952
Target:  5'- --gGC-CGGCGAGAUCAcgaucGAGGCCa- -3'
miRNA:   3'- gcaCGcGCCGCUCUAGUu----UUUCGGcc -5'
24073 3' -52.9 NC_005262.1 + 34979 0.67 0.826573
Target:  5'- --aGCGCGacGCGAGcUCGAGAuGCgCGGg -3'
miRNA:   3'- gcaCGCGC--CGCUCuAGUUUUuCG-GCC- -5'
24073 3' -52.9 NC_005262.1 + 35869 0.74 0.447238
Target:  5'- uGUGCGCGGCGAcgcgcgcaccuaucGGcUCAuccacGGGGCCGGc -3'
miRNA:   3'- gCACGCGCCGCU--------------CU-AGUu----UUUCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 36286 0.74 0.460054
Target:  5'- --cGCGCGGCGAcgcgaacaccucGGUCGAcuucgguggGGGGCCGGu -3'
miRNA:   3'- gcaCGCGCCGCU------------CUAGUU---------UUUCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 36749 0.68 0.768852
Target:  5'- gCGUaGCGC-GUGAGGUCGAu-GGCgGGg -3'
miRNA:   3'- -GCA-CGCGcCGCUCUAGUUuuUCGgCC- -5'
24073 3' -52.9 NC_005262.1 + 37290 0.72 0.532104
Target:  5'- aCGUGCGCGGCGAuccguUCAAGA--UCGGc -3'
miRNA:   3'- -GCACGCGCCGCUcu---AGUUUUucGGCC- -5'
24073 3' -52.9 NC_005262.1 + 38429 0.78 0.259959
Target:  5'- cCG-GCGCGGuCGAGAUCAc---GCCGGa -3'
miRNA:   3'- -GCaCGCGCC-GCUCUAGUuuuuCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 38544 0.68 0.78877
Target:  5'- gGU-CGCGGUGAcGAUCGGcaccgccgcGGGCCGGa -3'
miRNA:   3'- gCAcGCGCCGCU-CUAGUUu--------UUCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 40240 0.69 0.748374
Target:  5'- cCGcGCGCGGCGGGcgguugGUCAGucuGCgCGGu -3'
miRNA:   3'- -GCaCGCGCCGCUC------UAGUUuuuCG-GCC- -5'
24073 3' -52.9 NC_005262.1 + 40481 0.68 0.792678
Target:  5'- uCGUGCGCGGCGccuuGAUgcgcuugauggcgaaCGAcgGGgCGGg -3'
miRNA:   3'- -GCACGCGCCGCu---CUA---------------GUUuuUCgGCC- -5'
24073 3' -52.9 NC_005262.1 + 40849 0.68 0.768852
Target:  5'- gGUGCGgGGaCGGGcAUCAgcacgcAAAAuGCCGGc -3'
miRNA:   3'- gCACGCgCC-GCUC-UAGU------UUUU-CGGCC- -5'
24073 3' -52.9 NC_005262.1 + 41570 0.66 0.884578
Target:  5'- gCGUGgGCGGCGcGGccgugagcuuGUCGAGcgcGAGcCCGGc -3'
miRNA:   3'- -GCACgCGCCGC-UC----------UAGUUU---UUC-GGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.