miRNA display CGI


Results 61 - 80 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24073 3' -52.9 NC_005262.1 + 42482 0.7 0.695321
Target:  5'- aCGUGCGCguaGGUGGGGUUgguGAGcAGCCGc -3'
miRNA:   3'- -GCACGCG---CCGCUCUAG---UUUuUCGGCc -5'
24073 3' -52.9 NC_005262.1 + 43133 0.67 0.852826
Target:  5'- aGUGCGCcu--GGAUCuguGAGGAGCCGGc -3'
miRNA:   3'- gCACGCGccgcUCUAG---UUUUUCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 44177 0.68 0.798491
Target:  5'- --cGCgGCGGCGAGcUCAAu--GCCGu -3'
miRNA:   3'- gcaCG-CGCCGCUCuAGUUuuuCGGCc -5'
24073 3' -52.9 NC_005262.1 + 44734 0.69 0.727425
Target:  5'- --aGCGCGGCGGcGUCA-AGGGCCu- -3'
miRNA:   3'- gcaCGCGCCGCUcUAGUuUUUCGGcc -5'
24073 3' -52.9 NC_005262.1 + 45693 0.66 0.861128
Target:  5'- uCGUGCGCauCGAGggCcGGcAGCCGGc -3'
miRNA:   3'- -GCACGCGccGCUCuaGuUUuUCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 46746 0.7 0.673595
Target:  5'- cCGUGCGCGcGaCGAGcUCGcgGAGCUGc -3'
miRNA:   3'- -GCACGCGC-C-GCUCuAGUuuUUCGGCc -5'
24073 3' -52.9 NC_005262.1 + 47290 0.7 0.684483
Target:  5'- --cGcCGCGGCGaAGAUCGGcgaggcaaagcuGAAGCUGGc -3'
miRNA:   3'- gcaC-GCGCCGC-UCUAGUU------------UUUCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 48503 0.67 0.821095
Target:  5'- -aUGCGCGGCGAaucgacgacugGcagcauccaugccgcGUCGAAgugcAGGCCGGg -3'
miRNA:   3'- gcACGCGCCGCU-----------C---------------UAGUUU----UUCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 49241 0.69 0.721063
Target:  5'- aGUcCGCGcGCGAGGUCcgcGAccagaucaacgagcuGAAGCCGGa -3'
miRNA:   3'- gCAcGCGC-CGCUCUAG---UU---------------UUUCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 49501 0.7 0.662668
Target:  5'- gGUGCGCGcaGCGcGAUCGccGAGGGCCu- -3'
miRNA:   3'- gCACGCGC--CGCuCUAGU--UUUUCGGcc -5'
24073 3' -52.9 NC_005262.1 + 49715 0.66 0.884578
Target:  5'- gCGUGCcggGCGGCGAaccggCGGccGAAGCCGc -3'
miRNA:   3'- -GCACG---CGCCGCUcua--GUU--UUUCGGCc -5'
24073 3' -52.9 NC_005262.1 + 49854 0.68 0.798491
Target:  5'- gGUGCcgGCGGCGguaccGGAagcagcUCAGccGGCCGGa -3'
miRNA:   3'- gCACG--CGCCGC-----UCU------AGUUuuUCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 50296 0.7 0.662668
Target:  5'- cCGUGacgGCcGCGcGGAUUGAGGAGCCGGc -3'
miRNA:   3'- -GCACg--CGcCGC-UCUAGUUUUUCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 50403 0.67 0.823843
Target:  5'- --cGCGCGGCGA--UCAgcgccgcggagcgcGAGGGCCGc -3'
miRNA:   3'- gcaCGCGCCGCUcuAGU--------------UUUUCGGCc -5'
24073 3' -52.9 NC_005262.1 + 50777 0.68 0.778886
Target:  5'- --gGUGCGGUucGAGAUCA---AGCCGa -3'
miRNA:   3'- gcaCGCGCCG--CUCUAGUuuuUCGGCc -5'
24073 3' -52.9 NC_005262.1 + 51330 0.71 0.629759
Target:  5'- cCGcGCGCGGCaAGAUCGAAuccGCCa- -3'
miRNA:   3'- -GCaCGCGCCGcUCUAGUUUuu-CGGcc -5'
24073 3' -52.9 NC_005262.1 + 51711 1.11 0.00162
Target:  5'- uCGUGCGCGGCGAGAUCAAAAAGCCGGa -3'
miRNA:   3'- -GCACGCGCCGCUCUAGUUUUUCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 52393 0.68 0.808038
Target:  5'- cCG-GCGCGGCGcGGcuUCGGcguGGAGCCGc -3'
miRNA:   3'- -GCaCGCGCCGCuCU--AGUU---UUUCGGCc -5'
24073 3' -52.9 NC_005262.1 + 52451 0.67 0.816475
Target:  5'- aCGUGcCGCGcGCGAGcggcGUCuugcggaGGAGGGCCGa -3'
miRNA:   3'- -GCAC-GCGC-CGCUC----UAG-------UUUUUCGGCc -5'
24073 3' -52.9 NC_005262.1 + 52555 0.67 0.83554
Target:  5'- gGUGCGCaGCGcGAUCGucgcugucGAGCuCGGc -3'
miRNA:   3'- gCACGCGcCGCuCUAGUuu------UUCG-GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.