miRNA display CGI


Results 81 - 96 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24073 3' -52.9 NC_005262.1 + 53843 0.72 0.542749
Target:  5'- cCG-GCGCGGCGcggacggcaagcAGAUCGcgcucAAGCCGGc -3'
miRNA:   3'- -GCaCGCGCCGC------------UCUAGUuu---UUCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 54162 0.66 0.891887
Target:  5'- --aGaaCGGCGAGAUCGucAAGGcGCCGGu -3'
miRNA:   3'- gcaCgcGCCGCUCUAGU--UUUU-CGGCC- -5'
24073 3' -52.9 NC_005262.1 + 56914 0.73 0.50065
Target:  5'- --cGC-CGGCGAGAUCAA--GGCCGc -3'
miRNA:   3'- gcaCGcGCCGCUCUAGUUuuUCGGCc -5'
24073 3' -52.9 NC_005262.1 + 57058 0.67 0.852826
Target:  5'- aCGagGCGC-GCGAGAuguUCGAcAAGCaCGGg -3'
miRNA:   3'- -GCa-CGCGcCGCUCU---AGUUuUUCG-GCC- -5'
24073 3' -52.9 NC_005262.1 + 57281 0.66 0.884578
Target:  5'- gCGUGa-CGGCGAGGUCGGcgcGCUGa -3'
miRNA:   3'- -GCACgcGCCGCUCUAGUUuuuCGGCc -5'
24073 3' -52.9 NC_005262.1 + 57460 0.72 0.553464
Target:  5'- --cGCgGCGGCGAcGAUggaggucgagggCGAGAAGCCGGc -3'
miRNA:   3'- gcaCG-CGCCGCU-CUA------------GUUUUUCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 57496 0.72 0.564241
Target:  5'- gCG-GC-CGGCGAGcgCAAGAAGgCGGc -3'
miRNA:   3'- -GCaCGcGCCGCUCuaGUUUUUCgGCC- -5'
24073 3' -52.9 NC_005262.1 + 57560 0.66 0.891887
Target:  5'- cCGUgcGCGCGGCGGGcuUCAGcaucucGGCgGGc -3'
miRNA:   3'- -GCA--CGCGCCGCUCu-AGUUuu----UCGgCC- -5'
24073 3' -52.9 NC_005262.1 + 58239 0.69 0.737952
Target:  5'- uCGUGCGUGGUGAcGAuccgcgcaUCGAGcacGAGCCa- -3'
miRNA:   3'- -GCACGCGCCGCU-CU--------AGUUU---UUCGGcc -5'
24073 3' -52.9 NC_005262.1 + 58345 0.68 0.768852
Target:  5'- gGUuCGCcGCGAGGUCAugccgcGCCGGg -3'
miRNA:   3'- gCAcGCGcCGCUCUAGUuuuu--CGGCC- -5'
24073 3' -52.9 NC_005262.1 + 58460 0.72 0.575072
Target:  5'- gCGUGCGCGGCG---UCAcGAcGUCGGa -3'
miRNA:   3'- -GCACGCGCCGCucuAGUuUUuCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 58901 0.68 0.778886
Target:  5'- --cGCGCuGCGcGAUCA---GGCCGGc -3'
miRNA:   3'- gcaCGCGcCGCuCUAGUuuuUCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 59428 0.68 0.782859
Target:  5'- --aGCGCGGUGAGcuuUCAGGGgcuuacgaucgcgacGGCCGa -3'
miRNA:   3'- gcaCGCGCCGCUCu--AGUUUU---------------UCGGCc -5'
24073 3' -52.9 NC_005262.1 + 60189 0.74 0.460054
Target:  5'- aGUGgGCGGCaaccggCAAGGAGCCGGc -3'
miRNA:   3'- gCACgCGCCGcucua-GUUUUUCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 60214 0.69 0.737952
Target:  5'- --nGC-CGGCGAGGUCGGcAAGCUGc -3'
miRNA:   3'- gcaCGcGCCGCUCUAGUUuUUCGGCc -5'
24073 3' -52.9 NC_005262.1 + 61656 0.7 0.673595
Target:  5'- aGUGCuguaccGCGGCGcgcuGGAggcguUCAAGAAGCCGu -3'
miRNA:   3'- gCACG------CGCCGC----UCU-----AGUUUUUCGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.