Results 21 - 40 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24073 | 3' | -52.9 | NC_005262.1 | + | 51330 | 0.71 | 0.629759 |
Target: 5'- cCGcGCGCGGCaAGAUCGAAuccGCCa- -3' miRNA: 3'- -GCaCGCGCCGcUCUAGUUUuu-CGGcc -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 50777 | 0.68 | 0.778886 |
Target: 5'- --gGUGCGGUucGAGAUCA---AGCCGa -3' miRNA: 3'- gcaCGCGCCG--CUCUAGUuuuUCGGCc -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 50403 | 0.67 | 0.823843 |
Target: 5'- --cGCGCGGCGA--UCAgcgccgcggagcgcGAGGGCCGc -3' miRNA: 3'- gcaCGCGCCGCUcuAGU--------------UUUUCGGCc -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 50296 | 0.7 | 0.662668 |
Target: 5'- cCGUGacgGCcGCGcGGAUUGAGGAGCCGGc -3' miRNA: 3'- -GCACg--CGcCGC-UCUAGUUUUUCGGCC- -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 49854 | 0.68 | 0.798491 |
Target: 5'- gGUGCcgGCGGCGguaccGGAagcagcUCAGccGGCCGGa -3' miRNA: 3'- gCACG--CGCCGC-----UCU------AGUUuuUCGGCC- -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 49715 | 0.66 | 0.884578 |
Target: 5'- gCGUGCcggGCGGCGAaccggCGGccGAAGCCGc -3' miRNA: 3'- -GCACG---CGCCGCUcua--GUU--UUUCGGCc -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 49501 | 0.7 | 0.662668 |
Target: 5'- gGUGCGCGcaGCGcGAUCGccGAGGGCCu- -3' miRNA: 3'- gCACGCGC--CGCuCUAGU--UUUUCGGcc -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 49241 | 0.69 | 0.721063 |
Target: 5'- aGUcCGCGcGCGAGGUCcgcGAccagaucaacgagcuGAAGCCGGa -3' miRNA: 3'- gCAcGCGC-CGCUCUAG---UU---------------UUUCGGCC- -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 48503 | 0.67 | 0.821095 |
Target: 5'- -aUGCGCGGCGAaucgacgacugGcagcauccaugccgcGUCGAAgugcAGGCCGGg -3' miRNA: 3'- gcACGCGCCGCU-----------C---------------UAGUUU----UUCGGCC- -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 47290 | 0.7 | 0.684483 |
Target: 5'- --cGcCGCGGCGaAGAUCGGcgaggcaaagcuGAAGCUGGc -3' miRNA: 3'- gcaC-GCGCCGC-UCUAGUU------------UUUCGGCC- -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 46746 | 0.7 | 0.673595 |
Target: 5'- cCGUGCGCGcGaCGAGcUCGcgGAGCUGc -3' miRNA: 3'- -GCACGCGC-C-GCUCuAGUuuUUCGGCc -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 45693 | 0.66 | 0.861128 |
Target: 5'- uCGUGCGCauCGAGggCcGGcAGCCGGc -3' miRNA: 3'- -GCACGCGccGCUCuaGuUUuUCGGCC- -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 44734 | 0.69 | 0.727425 |
Target: 5'- --aGCGCGGCGGcGUCA-AGGGCCu- -3' miRNA: 3'- gcaCGCGCCGCUcUAGUuUUUCGGcc -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 44177 | 0.68 | 0.798491 |
Target: 5'- --cGCgGCGGCGAGcUCAAu--GCCGu -3' miRNA: 3'- gcaCG-CGCCGCUCuAGUUuuuCGGCc -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 43133 | 0.67 | 0.852826 |
Target: 5'- aGUGCGCcu--GGAUCuguGAGGAGCCGGc -3' miRNA: 3'- gCACGCGccgcUCUAG---UUUUUCGGCC- -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 42482 | 0.7 | 0.695321 |
Target: 5'- aCGUGCGCguaGGUGGGGUUgguGAGcAGCCGc -3' miRNA: 3'- -GCACGCG---CCGCUCUAG---UUUuUCGGCc -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 41570 | 0.66 | 0.884578 |
Target: 5'- gCGUGgGCGGCGcGGccgugagcuuGUCGAGcgcGAGcCCGGc -3' miRNA: 3'- -GCACgCGCCGC-UC----------UAGUUU---UUC-GGCC- -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 40849 | 0.68 | 0.768852 |
Target: 5'- gGUGCGgGGaCGGGcAUCAgcacgcAAAAuGCCGGc -3' miRNA: 3'- gCACGCgCC-GCUC-UAGU------UUUU-CGGCC- -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 40481 | 0.68 | 0.792678 |
Target: 5'- uCGUGCGCGGCGccuuGAUgcgcuugauggcgaaCGAcgGGgCGGg -3' miRNA: 3'- -GCACGCGCCGCu---CUA---------------GUUuuUCgGCC- -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 40240 | 0.69 | 0.748374 |
Target: 5'- cCGcGCGCGGCGGGcgguugGUCAGucuGCgCGGu -3' miRNA: 3'- -GCaCGCGCCGCUC------UAGUUuuuCG-GCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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