Results 41 - 60 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24073 | 3' | -52.9 | NC_005262.1 | + | 38544 | 0.68 | 0.78877 |
Target: 5'- gGU-CGCGGUGAcGAUCGGcaccgccgcGGGCCGGa -3' miRNA: 3'- gCAcGCGCCGCU-CUAGUUu--------UUCGGCC- -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 38429 | 0.78 | 0.259959 |
Target: 5'- cCG-GCGCGGuCGAGAUCAc---GCCGGa -3' miRNA: 3'- -GCaCGCGCC-GCUCUAGUuuuuCGGCC- -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 37290 | 0.72 | 0.532104 |
Target: 5'- aCGUGCGCGGCGAuccguUCAAGA--UCGGc -3' miRNA: 3'- -GCACGCGCCGCUcu---AGUUUUucGGCC- -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 36749 | 0.68 | 0.768852 |
Target: 5'- gCGUaGCGC-GUGAGGUCGAu-GGCgGGg -3' miRNA: 3'- -GCA-CGCGcCGCUCUAGUUuuUCGgCC- -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 36286 | 0.74 | 0.460054 |
Target: 5'- --cGCGCGGCGAcgcgaacaccucGGUCGAcuucgguggGGGGCCGGu -3' miRNA: 3'- gcaCGCGCCGCU------------CUAGUU---------UUUCGGCC- -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 35869 | 0.74 | 0.447238 |
Target: 5'- uGUGCGCGGCGAcgcgcgcaccuaucGGcUCAuccacGGGGCCGGc -3' miRNA: 3'- gCACGCGCCGCU--------------CU-AGUu----UUUCGGCC- -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 34979 | 0.67 | 0.826573 |
Target: 5'- --aGCGCGacGCGAGcUCGAGAuGCgCGGg -3' miRNA: 3'- gcaCGCGC--CGCUCuAGUUUUuCG-GCC- -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 33579 | 0.69 | 0.737952 |
Target: 5'- --gGC-CGGCGAGAUCAcgaucGAGGCCa- -3' miRNA: 3'- gcaCGcGCCGCUCUAGUu----UUUCGGcc -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 32193 | 0.69 | 0.737952 |
Target: 5'- gGUGCaCGGaGAGGUCGAAGGugaugcgaucGCCGGc -3' miRNA: 3'- gCACGcGCCgCUCUAGUUUUU----------CGGCC- -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 32180 | 0.69 | 0.706098 |
Target: 5'- --gGCgGCGGCGGcGG-CAGAAGGUCGGa -3' miRNA: 3'- gcaCG-CGCCGCU-CUaGUUUUUCGGCC- -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 30418 | 0.68 | 0.768852 |
Target: 5'- -cUGgGCGGCGucgacGAUCAc--GGCCGGc -3' miRNA: 3'- gcACgCGCCGCu----CUAGUuuuUCGGCC- -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 29885 | 0.68 | 0.778886 |
Target: 5'- --cGCGCGGCGcu-UCAGGAAGaugaCGGu -3' miRNA: 3'- gcaCGCGCCGCucuAGUUUUUCg---GCC- -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 28955 | 0.7 | 0.651713 |
Target: 5'- uGUGCucGCGcGCGAGGaagUCGGGGAGCUGa -3' miRNA: 3'- gCACG--CGC-CGCUCU---AGUUUUUCGGCc -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 27727 | 0.68 | 0.78877 |
Target: 5'- aGUGguCGCaGGaCGAGAUCGAcGAGCUGa -3' miRNA: 3'- gCAC--GCG-CC-GCUCUAGUUuUUCGGCc -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 25548 | 0.7 | 0.662668 |
Target: 5'- cCGUGCGCGGCGGcacGAUCcacc-GCCu- -3' miRNA: 3'- -GCACGCGCCGCU---CUAGuuuuuCGGcc -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 24952 | 0.69 | 0.716803 |
Target: 5'- --cGCGCGGCGcgcccAGcuUCAGGAacaGGCCGGc -3' miRNA: 3'- gcaCGCGCCGC-----UCu-AGUUUU---UCGGCC- -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 24892 | 0.7 | 0.673595 |
Target: 5'- gCGUGacaGGCGAGcUCGGccAGCCGGa -3' miRNA: 3'- -GCACgcgCCGCUCuAGUUuuUCGGCC- -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 24359 | 0.72 | 0.532104 |
Target: 5'- -cUGCGUGGCGAGGUaaucCGAGAgcaGGCCGc -3' miRNA: 3'- gcACGCGCCGCUCUA----GUUUU---UCGGCc -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 23839 | 0.69 | 0.716803 |
Target: 5'- --gGCGcCGGCGAGcgCAAGGAGagaGGg -3' miRNA: 3'- gcaCGC-GCCGCUCuaGUUUUUCgg-CC- -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 23464 | 0.69 | 0.716803 |
Target: 5'- -aUGCGCGGCcuGGA-CGAAuGGCUGGg -3' miRNA: 3'- gcACGCGCCGc-UCUaGUUUuUCGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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