miRNA display CGI


Results 61 - 80 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24073 3' -52.9 NC_005262.1 + 23162 0.68 0.798491
Target:  5'- cCGUGCccGUGGcCGGGGUCGuuGAcGCCGu -3'
miRNA:   3'- -GCACG--CGCC-GCUCUAGUuuUU-CGGCc -5'
24073 3' -52.9 NC_005262.1 + 22170 0.71 0.61878
Target:  5'- --aGCuggaGGCGaAGGUCGAGAAGCUGGa -3'
miRNA:   3'- gcaCGcg--CCGC-UCUAGUUUUUCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 22128 0.66 0.87701
Target:  5'- gGUGCcgGCGGCGAuGA-CGGcgccGCCGGa -3'
miRNA:   3'- gCACG--CGCCGCU-CUaGUUuuu-CGGCC- -5'
24073 3' -52.9 NC_005262.1 + 22073 0.69 0.727425
Target:  5'- cCGUcGUGCGGCucuGGAUCGAAAuGCCa- -3'
miRNA:   3'- -GCA-CGCGCCGc--UCUAGUUUUuCGGcc -5'
24073 3' -52.9 NC_005262.1 + 21821 0.72 0.564241
Target:  5'- -cUGCGCGGCGGuGUCAGGcaacAGGCgCGGc -3'
miRNA:   3'- gcACGCGCCGCUcUAGUUU----UUCG-GCC- -5'
24073 3' -52.9 NC_005262.1 + 21555 0.66 0.87701
Target:  5'- --aGCGCGGCGcucGGcAUCGGAaccgcGAGCgGGu -3'
miRNA:   3'- gcaCGCGCCGC---UC-UAGUUU-----UUCGgCC- -5'
24073 3' -52.9 NC_005262.1 + 20918 0.73 0.511048
Target:  5'- cCGUagcuCGCGGCGuuGcUCGGGGAGCCGGa -3'
miRNA:   3'- -GCAc---GCGCCGCucU-AGUUUUUCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 20751 0.66 0.891887
Target:  5'- gGUGC-CGGCcGGGUCGAuguacucguAGCUGGc -3'
miRNA:   3'- gCACGcGCCGcUCUAGUUuu-------UCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 19284 0.68 0.78877
Target:  5'- --aGCGCGGCGA--UCA---GGCUGGc -3'
miRNA:   3'- gcaCGCGCCGCUcuAGUuuuUCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 19099 0.68 0.778886
Target:  5'- uCGcGCGCGGCGAugccacguucgGAUCG---GGCgCGGg -3'
miRNA:   3'- -GCaCGCGCCGCU-----------CUAGUuuuUCG-GCC- -5'
24073 3' -52.9 NC_005262.1 + 17242 0.67 0.83554
Target:  5'- uCGUGgGCGucGCGGGAgCGGc-GGCCGGc -3'
miRNA:   3'- -GCACgCGC--CGCUCUaGUUuuUCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 17122 0.68 0.782859
Target:  5'- --cGCGCGGCGAuggaccacaaGAacgcgcgcgucgcaaUCgAGAAGGCCGGc -3'
miRNA:   3'- gcaCGCGCCGCU----------CU---------------AG-UUUUUCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 17053 0.73 0.480143
Target:  5'- cCG-GCGUGGCGGcGAUCGAuccggucguGCCGGa -3'
miRNA:   3'- -GCaCGCGCCGCU-CUAGUUuuu------CGGCC- -5'
24073 3' -52.9 NC_005262.1 + 16590 0.67 0.826573
Target:  5'- gCGUGUGCuGGuCGAGGcggCGAAGcAGCCGc -3'
miRNA:   3'- -GCACGCG-CC-GCUCUa--GUUUU-UCGGCc -5'
24073 3' -52.9 NC_005262.1 + 15553 0.66 0.869191
Target:  5'- aGUGCaGCcGCGAGAagCGAGagcaggagGAGCUGGa -3'
miRNA:   3'- gCACG-CGcCGCUCUa-GUUU--------UUCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 14298 0.67 0.844294
Target:  5'- gCGuUGCGUGGaCGGGAgggcggCGGAaccgccGAGCUGGg -3'
miRNA:   3'- -GC-ACGCGCC-GCUCUa-----GUUU------UUCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 13987 0.71 0.61878
Target:  5'- --cGCGCGGCc-GAUCG---GGCCGGa -3'
miRNA:   3'- gcaCGCGCCGcuCUAGUuuuUCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 13694 0.69 0.705023
Target:  5'- gGUGCugGCGcGUGAGGUCGAAGugccugacgugcuGGUCGGu -3'
miRNA:   3'- gCACG--CGC-CGCUCUAGUUUU-------------UCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 13537 0.67 0.852826
Target:  5'- gCGUGUGCaGCGGcAUCGA--GGCCGc -3'
miRNA:   3'- -GCACGCGcCGCUcUAGUUuuUCGGCc -5'
24073 3' -52.9 NC_005262.1 + 13475 0.77 0.309965
Target:  5'- -cUGCGCGGCGGGcgCugc-GGCCGGc -3'
miRNA:   3'- gcACGCGCCGCUCuaGuuuuUCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.