Results 1 - 20 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24073 | 3' | -52.9 | NC_005262.1 | + | 47290 | 0.7 | 0.684483 |
Target: 5'- --cGcCGCGGCGaAGAUCGGcgaggcaaagcuGAAGCUGGc -3' miRNA: 3'- gcaC-GCGCCGC-UCUAGUU------------UUUCGGCC- -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 22170 | 0.71 | 0.61878 |
Target: 5'- --aGCuggaGGCGaAGGUCGAGAAGCUGGa -3' miRNA: 3'- gcaCGcg--CCGC-UCUAGUUUUUCGGCC- -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 51330 | 0.71 | 0.629759 |
Target: 5'- cCGcGCGCGGCaAGAUCGAAuccGCCa- -3' miRNA: 3'- -GCaCGCGCCGcUCUAGUUUuu-CGGcc -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 49501 | 0.7 | 0.662668 |
Target: 5'- gGUGCGCGcaGCGcGAUCGccGAGGGCCu- -3' miRNA: 3'- gCACGCGC--CGCuCUAGU--UUUUCGGcc -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 50296 | 0.7 | 0.662668 |
Target: 5'- cCGUGacgGCcGCGcGGAUUGAGGAGCCGGc -3' miRNA: 3'- -GCACg--CGcCGC-UCUAGUUUUUCGGCC- -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 25548 | 0.7 | 0.662668 |
Target: 5'- cCGUGCGCGGCGGcacGAUCcacc-GCCu- -3' miRNA: 3'- -GCACGCGCCGCU---CUAGuuuuuCGGcc -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 24892 | 0.7 | 0.673595 |
Target: 5'- gCGUGacaGGCGAGcUCGGccAGCCGGa -3' miRNA: 3'- -GCACgcgCCGCUCuAGUUuuUCGGCC- -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 61656 | 0.7 | 0.673595 |
Target: 5'- aGUGCuguaccGCGGCGcgcuGGAggcguUCAAGAAGCCGu -3' miRNA: 3'- gCACG------CGCCGC----UCU-----AGUUUUUCGGCc -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 6141 | 0.7 | 0.684483 |
Target: 5'- uGUGCGCGGcCGGGAUUuu---GCUGa -3' miRNA: 3'- gCACGCGCC-GCUCUAGuuuuuCGGCc -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 58460 | 0.72 | 0.575072 |
Target: 5'- gCGUGCGCGGCG---UCAcGAcGUCGGa -3' miRNA: 3'- -GCACGCGCCGCucuAGUuUUuCGGCC- -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 57460 | 0.72 | 0.553464 |
Target: 5'- --cGCgGCGGCGAcGAUggaggucgagggCGAGAAGCCGGc -3' miRNA: 3'- gcaCG-CGCCGCU-CUA------------GUUUUUCGGCC- -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 53843 | 0.72 | 0.542749 |
Target: 5'- cCG-GCGCGGCGcggacggcaagcAGAUCGcgcucAAGCCGGc -3' miRNA: 3'- -GCaCGCGCCGC------------UCUAGUuu---UUCGGCC- -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 38429 | 0.78 | 0.259959 |
Target: 5'- cCG-GCGCGGuCGAGAUCAc---GCCGGa -3' miRNA: 3'- -GCaCGCGCC-GCUCUAGUuuuuCGGCC- -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 9533 | 0.76 | 0.333538 |
Target: 5'- -aUGCGCGGCGGGcuuaaccuaucUCAAGGAGCCGu -3' miRNA: 3'- gcACGCGCCGCUCu----------AGUUUUUCGGCc -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 35869 | 0.74 | 0.447238 |
Target: 5'- uGUGCGCGGCGAcgcgcgcaccuaucGGcUCAuccacGGGGCCGGc -3' miRNA: 3'- gCACGCGCCGCU--------------CU-AGUu----UUUCGGCC- -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 60189 | 0.74 | 0.460054 |
Target: 5'- aGUGgGCGGCaaccggCAAGGAGCCGGc -3' miRNA: 3'- gCACgCGCCGcucua-GUUUUUCGGCC- -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 36286 | 0.74 | 0.460054 |
Target: 5'- --cGCGCGGCGAcgcgaacaccucGGUCGAcuucgguggGGGGCCGGu -3' miRNA: 3'- gcaCGCGCCGCU------------CUAGUU---------UUUCGGCC- -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 56914 | 0.73 | 0.50065 |
Target: 5'- --cGC-CGGCGAGAUCAA--GGCCGc -3' miRNA: 3'- gcaCGcGCCGCUCUAGUUuuUCGGCc -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 20918 | 0.73 | 0.511048 |
Target: 5'- cCGUagcuCGCGGCGuuGcUCGGGGAGCCGGa -3' miRNA: 3'- -GCAc---GCGCCGCucU-AGUUUUUCGGCC- -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 37290 | 0.72 | 0.532104 |
Target: 5'- aCGUGCGCGGCGAuccguUCAAGA--UCGGc -3' miRNA: 3'- -GCACGCGCCGCUcu---AGUUUUucGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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