miRNA display CGI


Results 41 - 60 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24073 3' -52.9 NC_005262.1 + 11200 0.69 0.706098
Target:  5'- uCGUGCGCGccaccuGCaAGAUCG-AGAGCCGc -3'
miRNA:   3'- -GCACGCGC------CGcUCUAGUuUUUCGGCc -5'
24073 3' -52.9 NC_005262.1 + 13694 0.69 0.705023
Target:  5'- gGUGCugGCGcGUGAGGUCGAAGugccugacgugcuGGUCGGu -3'
miRNA:   3'- gCACG--CGC-CGCUCUAGUUUU-------------UCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 47290 0.7 0.684483
Target:  5'- --cGcCGCGGCGaAGAUCGGcgaggcaaagcuGAAGCUGGc -3'
miRNA:   3'- gcaC-GCGCCGC-UCUAGUU------------UUUCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 6141 0.7 0.684483
Target:  5'- uGUGCGCGGcCGGGAUUuu---GCUGa -3'
miRNA:   3'- gCACGCGCC-GCUCUAGuuuuuCGGCc -5'
24073 3' -52.9 NC_005262.1 + 61656 0.7 0.673595
Target:  5'- aGUGCuguaccGCGGCGcgcuGGAggcguUCAAGAAGCCGu -3'
miRNA:   3'- gCACG------CGCCGC----UCU-----AGUUUUUCGGCc -5'
24073 3' -52.9 NC_005262.1 + 24892 0.7 0.673595
Target:  5'- gCGUGacaGGCGAGcUCGGccAGCCGGa -3'
miRNA:   3'- -GCACgcgCCGCUCuAGUUuuUCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 25548 0.7 0.662668
Target:  5'- cCGUGCGCGGCGGcacGAUCcacc-GCCu- -3'
miRNA:   3'- -GCACGCGCCGCU---CUAGuuuuuCGGcc -5'
24073 3' -52.9 NC_005262.1 + 50296 0.7 0.662668
Target:  5'- cCGUGacgGCcGCGcGGAUUGAGGAGCCGGc -3'
miRNA:   3'- -GCACg--CGcCGC-UCUAGUUUUUCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 49501 0.7 0.662668
Target:  5'- gGUGCGCGcaGCGcGAUCGccGAGGGCCu- -3'
miRNA:   3'- gCACGCGC--CGCuCUAGU--UUUUCGGcc -5'
24073 3' -52.9 NC_005262.1 + 51330 0.71 0.629759
Target:  5'- cCGcGCGCGGCaAGAUCGAAuccGCCa- -3'
miRNA:   3'- -GCaCGCGCCGcUCUAGUUUuu-CGGcc -5'
24073 3' -52.9 NC_005262.1 + 6883 0.66 0.884578
Target:  5'- --aGCGCGGCcuuGAUCuc---GCCGGc -3'
miRNA:   3'- gcaCGCGCCGcu-CUAGuuuuuCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 22128 0.66 0.87701
Target:  5'- gGUGCcgGCGGCGAuGA-CGGcgccGCCGGa -3'
miRNA:   3'- gCACG--CGCCGCU-CUaGUUuuu-CGGCC- -5'
24073 3' -52.9 NC_005262.1 + 21555 0.66 0.87701
Target:  5'- --aGCGCGGCGcucGGcAUCGGAaccgcGAGCgGGu -3'
miRNA:   3'- gcaCGCGCCGC---UC-UAGUUU-----UUCGgCC- -5'
24073 3' -52.9 NC_005262.1 + 57058 0.67 0.852826
Target:  5'- aCGagGCGC-GCGAGAuguUCGAcAAGCaCGGg -3'
miRNA:   3'- -GCa-CGCGcCGCUCU---AGUUuUUCG-GCC- -5'
24073 3' -52.9 NC_005262.1 + 41570 0.66 0.884578
Target:  5'- gCGUGgGCGGCGcGGccgugagcuuGUCGAGcgcGAGcCCGGc -3'
miRNA:   3'- -GCACgCGCCGC-UC----------UAGUUU---UUC-GGCC- -5'
24073 3' -52.9 NC_005262.1 + 57281 0.66 0.884578
Target:  5'- gCGUGa-CGGCGAGGUCGGcgcGCUGa -3'
miRNA:   3'- -GCACgcGCCGCUCUAGUUuuuCGGCc -5'
24073 3' -52.9 NC_005262.1 + 20751 0.66 0.891887
Target:  5'- gGUGC-CGGCcGGGUCGAuguacucguAGCUGGc -3'
miRNA:   3'- gCACGcGCCGcUCUAGUUuu-------UCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 4813 0.66 0.891887
Target:  5'- aCG-GCGCGG-GAGG-CGuGAGGCCGc -3'
miRNA:   3'- -GCaCGCGCCgCUCUaGUuUUUCGGCc -5'
24073 3' -52.9 NC_005262.1 + 57560 0.66 0.891887
Target:  5'- cCGUgcGCGCGGCGGGcuUCAGcaucucGGCgGGc -3'
miRNA:   3'- -GCA--CGCGCCGCUCu-AGUUuu----UCGgCC- -5'
24073 3' -52.9 NC_005262.1 + 17053 0.73 0.480143
Target:  5'- cCG-GCGUGGCGGcGAUCGAuccggucguGCCGGa -3'
miRNA:   3'- -GCaCGCGCCGCU-CUAGUUuuu------CGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.