miRNA display CGI


Results 61 - 80 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24073 3' -52.9 NC_005262.1 + 58239 0.69 0.737952
Target:  5'- uCGUGCGUGGUGAcGAuccgcgcaUCGAGcacGAGCCa- -3'
miRNA:   3'- -GCACGCGCCGCU-CU--------AGUUU---UUCGGcc -5'
24073 3' -52.9 NC_005262.1 + 32193 0.69 0.737952
Target:  5'- gGUGCaCGGaGAGGUCGAAGGugaugcgaucGCCGGc -3'
miRNA:   3'- gCACGcGCCgCUCUAGUUUUU----------CGGCC- -5'
24073 3' -52.9 NC_005262.1 + 22073 0.69 0.727425
Target:  5'- cCGUcGUGCGGCucuGGAUCGAAAuGCCa- -3'
miRNA:   3'- -GCA-CGCGCCGc--UCUAGUUUUuCGGcc -5'
24073 3' -52.9 NC_005262.1 + 44734 0.69 0.727425
Target:  5'- --aGCGCGGCGGcGUCA-AGGGCCu- -3'
miRNA:   3'- gcaCGCGCCGCUcUAGUuUUUCGGcc -5'
24073 3' -52.9 NC_005262.1 + 52393 0.68 0.808038
Target:  5'- cCG-GCGCGGCGcGGcuUCGGcguGGAGCCGc -3'
miRNA:   3'- -GCaCGCGCCGCuCU--AGUU---UUUCGGCc -5'
24073 3' -52.9 NC_005262.1 + 52451 0.67 0.816475
Target:  5'- aCGUGcCGCGcGCGAGcggcGUCuugcggaGGAGGGCCGa -3'
miRNA:   3'- -GCAC-GCGC-CGCUC----UAG-------UUUUUCGGCc -5'
24073 3' -52.9 NC_005262.1 + 48503 0.67 0.821095
Target:  5'- -aUGCGCGGCGAaucgacgacugGcagcauccaugccgcGUCGAAgugcAGGCCGGg -3'
miRNA:   3'- gcACGCGCCGCU-----------C---------------UAGUUU----UUCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 57560 0.66 0.891887
Target:  5'- cCGUgcGCGCGGCGGGcuUCAGcaucucGGCgGGc -3'
miRNA:   3'- -GCA--CGCGCCGCUCu-AGUUuu----UCGgCC- -5'
24073 3' -52.9 NC_005262.1 + 4813 0.66 0.891887
Target:  5'- aCG-GCGCGG-GAGG-CGuGAGGCCGc -3'
miRNA:   3'- -GCaCGCGCCgCUCUaGUuUUUCGGCc -5'
24073 3' -52.9 NC_005262.1 + 20751 0.66 0.891887
Target:  5'- gGUGC-CGGCcGGGUCGAuguacucguAGCUGGc -3'
miRNA:   3'- gCACGcGCCGcUCUAGUUuu-------UCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 57281 0.66 0.884578
Target:  5'- gCGUGa-CGGCGAGGUCGGcgcGCUGa -3'
miRNA:   3'- -GCACgcGCCGCUCUAGUUuuuCGGCc -5'
24073 3' -52.9 NC_005262.1 + 41570 0.66 0.884578
Target:  5'- gCGUGgGCGGCGcGGccgugagcuuGUCGAGcgcGAGcCCGGc -3'
miRNA:   3'- -GCACgCGCCGC-UC----------UAGUUU---UUC-GGCC- -5'
24073 3' -52.9 NC_005262.1 + 6883 0.66 0.884578
Target:  5'- --aGCGCGGCcuuGAUCuc---GCCGGc -3'
miRNA:   3'- gcaCGCGCCGcu-CUAGuuuuuCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 22128 0.66 0.87701
Target:  5'- gGUGCcgGCGGCGAuGA-CGGcgccGCCGGa -3'
miRNA:   3'- gCACG--CGCCGCU-CUaGUUuuu-CGGCC- -5'
24073 3' -52.9 NC_005262.1 + 21555 0.66 0.87701
Target:  5'- --aGCGCGGCGcucGGcAUCGGAaccgcGAGCgGGu -3'
miRNA:   3'- gcaCGCGCCGC---UC-UAGUUU-----UUCGgCC- -5'
24073 3' -52.9 NC_005262.1 + 57058 0.67 0.852826
Target:  5'- aCGagGCGC-GCGAGAuguUCGAcAAGCaCGGg -3'
miRNA:   3'- -GCa-CGCGcCGCUCU---AGUUuUUCG-GCC- -5'
24073 3' -52.9 NC_005262.1 + 43133 0.67 0.852826
Target:  5'- aGUGCGCcu--GGAUCuguGAGGAGCCGGc -3'
miRNA:   3'- gCACGCGccgcUCUAG---UUUUUCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 52555 0.67 0.83554
Target:  5'- gGUGCGCaGCGcGAUCGucgcugucGAGCuCGGc -3'
miRNA:   3'- gCACGCGcCGCuCUAGUuu------UUCG-GCC- -5'
24073 3' -52.9 NC_005262.1 + 17242 0.67 0.83554
Target:  5'- uCGUGgGCGucGCGGGAgCGGc-GGCCGGc -3'
miRNA:   3'- -GCACgCGC--CGCUCUaGUUuuUCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 34979 0.67 0.826573
Target:  5'- --aGCGCGacGCGAGcUCGAGAuGCgCGGg -3'
miRNA:   3'- gcaCGCGC--CGCUCuAGUUUUuCG-GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.