miRNA display CGI


Results 81 - 96 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24073 3' -52.9 NC_005262.1 + 20751 0.66 0.891887
Target:  5'- gGUGC-CGGCcGGGUCGAuguacucguAGCUGGc -3'
miRNA:   3'- gCACGcGCCGcUCUAGUUuu-------UCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 4813 0.66 0.891887
Target:  5'- aCG-GCGCGG-GAGG-CGuGAGGCCGc -3'
miRNA:   3'- -GCaCGCGCCgCUCUaGUuUUUCGGCc -5'
24073 3' -52.9 NC_005262.1 + 57560 0.66 0.891887
Target:  5'- cCGUgcGCGCGGCGGGcuUCAGcaucucGGCgGGc -3'
miRNA:   3'- -GCA--CGCGCCGCUCu-AGUUuu----UCGgCC- -5'
24073 3' -52.9 NC_005262.1 + 43133 0.67 0.852826
Target:  5'- aGUGCGCcu--GGAUCuguGAGGAGCCGGc -3'
miRNA:   3'- gCACGCGccgcUCUAG---UUUUUCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 52555 0.67 0.83554
Target:  5'- gGUGCGCaGCGcGAUCGucgcugucGAGCuCGGc -3'
miRNA:   3'- gCACGCGcCGCuCUAGUuu------UUCG-GCC- -5'
24073 3' -52.9 NC_005262.1 + 17242 0.67 0.83554
Target:  5'- uCGUGgGCGucGCGGGAgCGGc-GGCCGGc -3'
miRNA:   3'- -GCACgCGC--CGCUCUaGUUuuUCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 19099 0.68 0.778886
Target:  5'- uCGcGCGCGGCGAugccacguucgGAUCG---GGCgCGGg -3'
miRNA:   3'- -GCaCGCGCCGCU-----------CUAGUuuuUCG-GCC- -5'
24073 3' -52.9 NC_005262.1 + 59428 0.68 0.782859
Target:  5'- --aGCGCGGUGAGcuuUCAGGGgcuuacgaucgcgacGGCCGa -3'
miRNA:   3'- gcaCGCGCCGCUCu--AGUUUU---------------UCGGCc -5'
24073 3' -52.9 NC_005262.1 + 19284 0.68 0.78877
Target:  5'- --aGCGCGGCGA--UCA---GGCUGGc -3'
miRNA:   3'- gcaCGCGCCGCUcuAGUuuuUCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 40481 0.68 0.792678
Target:  5'- uCGUGCGCGGCGccuuGAUgcgcuugauggcgaaCGAcgGGgCGGg -3'
miRNA:   3'- -GCACGCGCCGCu---CUA---------------GUUuuUCgGCC- -5'
24073 3' -52.9 NC_005262.1 + 23162 0.68 0.798491
Target:  5'- cCGUGCccGUGGcCGGGGUCGuuGAcGCCGu -3'
miRNA:   3'- -GCACG--CGCC-GCUCUAGUuuUU-CGGCc -5'
24073 3' -52.9 NC_005262.1 + 52393 0.68 0.808038
Target:  5'- cCG-GCGCGGCGcGGcuUCGGcguGGAGCCGc -3'
miRNA:   3'- -GCaCGCGCCGCuCU--AGUU---UUUCGGCc -5'
24073 3' -52.9 NC_005262.1 + 52451 0.67 0.816475
Target:  5'- aCGUGcCGCGcGCGAGcggcGUCuugcggaGGAGGGCCGa -3'
miRNA:   3'- -GCAC-GCGC-CGCUC----UAG-------UUUUUCGGCc -5'
24073 3' -52.9 NC_005262.1 + 48503 0.67 0.821095
Target:  5'- -aUGCGCGGCGAaucgacgacugGcagcauccaugccgcGUCGAAgugcAGGCCGGg -3'
miRNA:   3'- gcACGCGCCGCU-----------C---------------UAGUUU----UUCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 34979 0.67 0.826573
Target:  5'- --aGCGCGacGCGAGcUCGAGAuGCgCGGg -3'
miRNA:   3'- gcaCGCGC--CGCUCuAGUUUUuCG-GCC- -5'
24073 3' -52.9 NC_005262.1 + 9761 0.65 0.896848
Target:  5'- cCGUGCGCucgauggugcuguaGGCGAG--CAGGuuGCCGu -3'
miRNA:   3'- -GCACGCG--------------CCGCUCuaGUUUuuCGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.