Results 21 - 40 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24073 | 3' | -52.9 | NC_005262.1 | + | 1703 | 0.68 | 0.778886 |
Target: 5'- -uUGcCGCGGCggcgacgcauGAGGUCGAGAAGCUa- -3' miRNA: 3'- gcAC-GCGCCG----------CUCUAGUUUUUCGGcc -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 19284 | 0.68 | 0.78877 |
Target: 5'- --aGCGCGGCGA--UCA---GGCUGGc -3' miRNA: 3'- gcaCGCGCCGCUcuAGUuuuUCGGCC- -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 43133 | 0.67 | 0.852826 |
Target: 5'- aGUGCGCcu--GGAUCuguGAGGAGCCGGc -3' miRNA: 3'- gCACGCGccgcUCUAG---UUUUUCGGCC- -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 20751 | 0.66 | 0.891887 |
Target: 5'- gGUGC-CGGCcGGGUCGAuguacucguAGCUGGc -3' miRNA: 3'- gCACGcGCCGcUCUAGUUuu-------UCGGCC- -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 46746 | 0.7 | 0.673595 |
Target: 5'- cCGUGCGCGcGaCGAGcUCGcgGAGCUGc -3' miRNA: 3'- -GCACGCGC-C-GCUCuAGUuuUUCGGCc -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 58239 | 0.69 | 0.737952 |
Target: 5'- uCGUGCGUGGUGAcGAuccgcgcaUCGAGcacGAGCCa- -3' miRNA: 3'- -GCACGCGCCGCU-CU--------AGUUU---UUCGGcc -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 23162 | 0.68 | 0.798491 |
Target: 5'- cCGUGCccGUGGcCGGGGUCGuuGAcGCCGu -3' miRNA: 3'- -GCACG--CGCC-GCUCUAGUuuUU-CGGCc -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 4813 | 0.66 | 0.891887 |
Target: 5'- aCG-GCGCGG-GAGG-CGuGAGGCCGc -3' miRNA: 3'- -GCaCGCGCCgCUCUaGUuUUUCGGCc -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 40240 | 0.69 | 0.748374 |
Target: 5'- cCGcGCGCGGCGGGcgguugGUCAGucuGCgCGGu -3' miRNA: 3'- -GCaCGCGCCGCUC------UAGUUuuuCG-GCC- -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 57560 | 0.66 | 0.891887 |
Target: 5'- cCGUgcGCGCGGCGGGcuUCAGcaucucGGCgGGc -3' miRNA: 3'- -GCA--CGCGCCGCUCu-AGUUuu----UCGgCC- -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 40481 | 0.68 | 0.792678 |
Target: 5'- uCGUGCGCGGCGccuuGAUgcgcuugauggcgaaCGAcgGGgCGGg -3' miRNA: 3'- -GCACGCGCCGCu---CUA---------------GUUuuUCgGCC- -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 58345 | 0.68 | 0.768852 |
Target: 5'- gGUuCGCcGCGAGGUCAugccgcGCCGGg -3' miRNA: 3'- gCAcGCGcCGCUCUAGUuuuu--CGGCC- -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 48503 | 0.67 | 0.821095 |
Target: 5'- -aUGCGCGGCGAaucgacgacugGcagcauccaugccgcGUCGAAgugcAGGCCGGg -3' miRNA: 3'- gcACGCGCCGCU-----------C---------------UAGUUU----UUCGGCC- -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 52555 | 0.67 | 0.83554 |
Target: 5'- gGUGCGCaGCGcGAUCGucgcugucGAGCuCGGc -3' miRNA: 3'- gCACGCGcCGCuCUAGUuu------UUCG-GCC- -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 22128 | 0.66 | 0.87701 |
Target: 5'- gGUGCcgGCGGCGAuGA-CGGcgccGCCGGa -3' miRNA: 3'- gCACG--CGCCGCU-CUaGUUuuu-CGGCC- -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 57281 | 0.66 | 0.884578 |
Target: 5'- gCGUGa-CGGCGAGGUCGGcgcGCUGa -3' miRNA: 3'- -GCACgcGCCGCUCUAGUUuuuCGGCc -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 6212 | 0.71 | 0.61878 |
Target: 5'- cCGUGCGCca-GAGGUCAuccGGAGCCGc -3' miRNA: 3'- -GCACGCGccgCUCUAGUu--UUUCGGCc -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 6698 | 0.7 | 0.662668 |
Target: 5'- gCGUGcCGUGGaacauGAUCGGGAAGCCGc -3' miRNA: 3'- -GCAC-GCGCCgcu--CUAGUUUUUCGGCc -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 23839 | 0.69 | 0.716803 |
Target: 5'- --gGCGcCGGCGAGcgCAAGGAGagaGGg -3' miRNA: 3'- gcaCGC-GCCGCUCuaGUUUUUCgg-CC- -5' |
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24073 | 3' | -52.9 | NC_005262.1 | + | 32193 | 0.69 | 0.737952 |
Target: 5'- gGUGCaCGGaGAGGUCGAAGGugaugcgaucGCCGGc -3' miRNA: 3'- gCACGcGCCgCUCUAGUUUUU----------CGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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