miRNA display CGI


Results 41 - 60 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24073 3' -52.9 NC_005262.1 + 32193 0.69 0.737952
Target:  5'- gGUGCaCGGaGAGGUCGAAGGugaugcgaucGCCGGc -3'
miRNA:   3'- gCACGcGCCgCUCUAGUUUUU----------CGGCC- -5'
24073 3' -52.9 NC_005262.1 + 13475 0.77 0.309965
Target:  5'- -cUGCGCGGCGGGcgCugc-GGCCGGc -3'
miRNA:   3'- gcACGCGCCGCUCuaGuuuuUCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 40240 0.69 0.748374
Target:  5'- cCGcGCGCGGCGGGcgguugGUCAGucuGCgCGGu -3'
miRNA:   3'- -GCaCGCGCCGCUC------UAGUUuuuCG-GCC- -5'
24073 3' -52.9 NC_005262.1 + 3730 0.72 0.575072
Target:  5'- uCGcGCGCGGCGuuGcgCAGGAugaacGCCGGg -3'
miRNA:   3'- -GCaCGCGCCGCu-CuaGUUUUu----CGGCC- -5'
24073 3' -52.9 NC_005262.1 + 28955 0.7 0.651713
Target:  5'- uGUGCucGCGcGCGAGGaagUCGGGGAGCUGa -3'
miRNA:   3'- gCACG--CGC-CGCUCU---AGUUUUUCGGCc -5'
24073 3' -52.9 NC_005262.1 + 17053 0.73 0.480143
Target:  5'- cCG-GCGUGGCGGcGAUCGAuccggucguGCCGGa -3'
miRNA:   3'- -GCaCGCGCCGCU-CUAGUUuuu------CGGCC- -5'
24073 3' -52.9 NC_005262.1 + 33579 0.69 0.737952
Target:  5'- --gGC-CGGCGAGAUCAcgaucGAGGCCa- -3'
miRNA:   3'- gcaCGcGCCGCUCUAGUu----UUUCGGcc -5'
24073 3' -52.9 NC_005262.1 + 56914 0.73 0.50065
Target:  5'- --cGC-CGGCGAGAUCAA--GGCCGc -3'
miRNA:   3'- gcaCGcGCCGCUCUAGUUuuUCGGCc -5'
24073 3' -52.9 NC_005262.1 + 54162 0.66 0.891887
Target:  5'- --aGaaCGGCGAGAUCGucAAGGcGCCGGu -3'
miRNA:   3'- gcaCgcGCCGCUCUAGU--UUUU-CGGCC- -5'
24073 3' -52.9 NC_005262.1 + 49715 0.66 0.884578
Target:  5'- gCGUGCcggGCGGCGAaccggCGGccGAAGCCGc -3'
miRNA:   3'- -GCACG---CGCCGCUcua--GUU--UUUCGGCc -5'
24073 3' -52.9 NC_005262.1 + 49241 0.69 0.721063
Target:  5'- aGUcCGCGcGCGAGGUCcgcGAccagaucaacgagcuGAAGCCGGa -3'
miRNA:   3'- gCAcGCGC-CGCUCUAG---UU---------------UUUCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 60214 0.69 0.737952
Target:  5'- --nGC-CGGCGAGGUCGGcAAGCUGc -3'
miRNA:   3'- gcaCGcGCCGCUCUAGUUuUUCGGCc -5'
24073 3' -52.9 NC_005262.1 + 5290 0.69 0.737952
Target:  5'- uCGUGgucgaucaCGCGGuCGAGGcggUCGGAGcuGGCCGGc -3'
miRNA:   3'- -GCAC--------GCGCC-GCUCU---AGUUUU--UCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 12121 0.69 0.716803
Target:  5'- cCGUGCGC-GCGAgcaGAUCGccgcgcugGAGAGCCaGGu -3'
miRNA:   3'- -GCACGCGcCGCU---CUAGU--------UUUUCGG-CC- -5'
24073 3' -52.9 NC_005262.1 + 23464 0.69 0.716803
Target:  5'- -aUGCGCGGCcuGGA-CGAAuGGCUGGg -3'
miRNA:   3'- gcACGCGCCGc-UCUaGUUUuUCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 32180 0.69 0.706098
Target:  5'- --gGCgGCGGCGGcGG-CAGAAGGUCGGa -3'
miRNA:   3'- gcaCG-CGCCGCU-CUaGUUUUUCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 49501 0.7 0.662668
Target:  5'- gGUGCGCGcaGCGcGAUCGccGAGGGCCu- -3'
miRNA:   3'- gCACGCGC--CGCuCUAGU--UUUUCGGcc -5'
24073 3' -52.9 NC_005262.1 + 51330 0.71 0.629759
Target:  5'- cCGcGCGCGGCaAGAUCGAAuccGCCa- -3'
miRNA:   3'- -GCaCGCGCCGcUCUAGUUUuu-CGGcc -5'
24073 3' -52.9 NC_005262.1 + 22170 0.71 0.61878
Target:  5'- --aGCuggaGGCGaAGGUCGAGAAGCUGGa -3'
miRNA:   3'- gcaCGcg--CCGC-UCUAGUUUUUCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 15553 0.66 0.869191
Target:  5'- aGUGCaGCcGCGAGAagCGAGagcaggagGAGCUGGa -3'
miRNA:   3'- gCACG-CGcCGCUCUa-GUUU--------UUCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.