miRNA display CGI


Results 61 - 80 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24073 3' -52.9 NC_005262.1 + 53843 0.72 0.542749
Target:  5'- cCG-GCGCGGCGcggacggcaagcAGAUCGcgcucAAGCCGGc -3'
miRNA:   3'- -GCaCGCGCCGC------------UCUAGUuu---UUCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 56914 0.73 0.50065
Target:  5'- --cGC-CGGCGAGAUCAA--GGCCGc -3'
miRNA:   3'- gcaCGcGCCGCUCUAGUUuuUCGGCc -5'
24073 3' -52.9 NC_005262.1 + 36286 0.74 0.460054
Target:  5'- --cGCGCGGCGAcgcgaacaccucGGUCGAcuucgguggGGGGCCGGu -3'
miRNA:   3'- gcaCGCGCCGCU------------CUAGUU---------UUUCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 60189 0.74 0.460054
Target:  5'- aGUGgGCGGCaaccggCAAGGAGCCGGc -3'
miRNA:   3'- gCACgCGCCGcucua-GUUUUUCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 12121 0.69 0.716803
Target:  5'- cCGUGCGC-GCGAgcaGAUCGccgcgcugGAGAGCCaGGu -3'
miRNA:   3'- -GCACGCGcCGCU---CUAGU--------UUUUCGG-CC- -5'
24073 3' -52.9 NC_005262.1 + 24952 0.69 0.716803
Target:  5'- --cGCGCGGCGcgcccAGcuUCAGGAacaGGCCGGc -3'
miRNA:   3'- gcaCGCGCCGC-----UCu-AGUUUU---UCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 15553 0.66 0.869191
Target:  5'- aGUGCaGCcGCGAGAagCGAGagcaggagGAGCUGGa -3'
miRNA:   3'- gCACG-CGcCGCUCUa-GUUU--------UUCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 8918 0.66 0.865995
Target:  5'- gGUGCGCGGCGAaaagcgcccGAUUAuuugacccucGCgCGGg -3'
miRNA:   3'- gCACGCGCCGCU---------CUAGUuuuu------CG-GCC- -5'
24073 3' -52.9 NC_005262.1 + 45693 0.66 0.861128
Target:  5'- uCGUGCGCauCGAGggCcGGcAGCCGGc -3'
miRNA:   3'- -GCACGCGccGCUCuaGuUUuUCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 13537 0.67 0.852826
Target:  5'- gCGUGUGCaGCGGcAUCGA--GGCCGc -3'
miRNA:   3'- -GCACGCGcCGCUcUAGUUuuUCGGCc -5'
24073 3' -52.9 NC_005262.1 + 14298 0.67 0.844294
Target:  5'- gCGuUGCGUGGaCGGGAgggcggCGGAaccgccGAGCUGGg -3'
miRNA:   3'- -GC-ACGCGCC-GCUCUa-----GUUU------UUCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 16590 0.67 0.826573
Target:  5'- gCGUGUGCuGGuCGAGGcggCGAAGcAGCCGc -3'
miRNA:   3'- -GCACGCG-CC-GCUCUa--GUUUU-UCGGCc -5'
24073 3' -52.9 NC_005262.1 + 50403 0.67 0.823843
Target:  5'- --cGCGCGGCGA--UCAgcgccgcggagcgcGAGGGCCGc -3'
miRNA:   3'- gcaCGCGCCGCUcuAGU--------------UUUUCGGCc -5'
24073 3' -52.9 NC_005262.1 + 6640 0.68 0.808038
Target:  5'- uGUGCgGCGGCGcuucGAUCGcGucGCCGu -3'
miRNA:   3'- gCACG-CGCCGCu---CUAGUuUuuCGGCc -5'
24073 3' -52.9 NC_005262.1 + 44177 0.68 0.798491
Target:  5'- --cGCgGCGGCGAGcUCAAu--GCCGu -3'
miRNA:   3'- gcaCG-CGCCGCUCuAGUUuuuCGGCc -5'
24073 3' -52.9 NC_005262.1 + 49854 0.68 0.798491
Target:  5'- gGUGCcgGCGGCGguaccGGAagcagcUCAGccGGCCGGa -3'
miRNA:   3'- gCACG--CGCCGC-----UCU------AGUUuuUCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 38544 0.68 0.78877
Target:  5'- gGU-CGCGGUGAcGAUCGGcaccgccgcGGGCCGGa -3'
miRNA:   3'- gCAcGCGCCGCU-CUAGUUu--------UUCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 5290 0.69 0.737952
Target:  5'- uCGUGgucgaucaCGCGGuCGAGGcggUCGGAGcuGGCCGGc -3'
miRNA:   3'- -GCAC--------GCGCC-GCUCU---AGUUUU--UCGGCC- -5'
24073 3' -52.9 NC_005262.1 + 60214 0.69 0.737952
Target:  5'- --nGC-CGGCGAGGUCGGcAAGCUGc -3'
miRNA:   3'- gcaCGcGCCGCUCUAGUUuUUCGGCc -5'
24073 3' -52.9 NC_005262.1 + 49241 0.69 0.721063
Target:  5'- aGUcCGCGcGCGAGGUCcgcGAccagaucaacgagcuGAAGCCGGa -3'
miRNA:   3'- gCAcGCGC-CGCUCUAG---UU---------------UUUCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.