miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24073 5' -59.9 NC_005262.1 + 15762 0.66 0.473268
Target:  5'- uGCgGGCgCGGCcGGCU-GCUGCGUg -3'
miRNA:   3'- cUGgUCGaGCCGuUCGAcCGACGCGu -5'
24073 5' -59.9 NC_005262.1 + 38539 0.66 0.473268
Target:  5'- uGCCAGaggCGGCGcaggAGCcGGCguUGCGCGc -3'
miRNA:   3'- cUGGUCga-GCCGU----UCGaCCG--ACGCGU- -5'
24073 5' -59.9 NC_005262.1 + 12900 0.66 0.473268
Target:  5'- cAUCAGCccCGGCcuGCUGGacgacgacaacCUGCGCGg -3'
miRNA:   3'- cUGGUCGa-GCCGuuCGACC-----------GACGCGU- -5'
24073 5' -59.9 NC_005262.1 + 40237 0.66 0.463405
Target:  5'- cGCCcGCgcgCGGCGGGCgguUGGUcagucUGCGCGg -3'
miRNA:   3'- cUGGuCGa--GCCGUUCG---ACCG-----ACGCGU- -5'
24073 5' -59.9 NC_005262.1 + 10836 0.66 0.457539
Target:  5'- -cCCGGCUCGaGCAccuugccgccggcgaAGCccaGGCgGCGCAg -3'
miRNA:   3'- cuGGUCGAGC-CGU---------------UCGa--CCGaCGCGU- -5'
24073 5' -59.9 NC_005262.1 + 53220 0.66 0.453651
Target:  5'- cGCCGcGCUgcuccgCGGUAcGCUgcGGCUGCGCGc -3'
miRNA:   3'- cUGGU-CGA------GCCGUuCGA--CCGACGCGU- -5'
24073 5' -59.9 NC_005262.1 + 8160 0.66 0.453651
Target:  5'- cGGCCacgAGCgcgCGGCccGGCUucuuGCUGCGCAg -3'
miRNA:   3'- -CUGG---UCGa--GCCGu-UCGAc---CGACGCGU- -5'
24073 5' -59.9 NC_005262.1 + 39935 0.66 0.444009
Target:  5'- cGACCGGaCgggCGGCAccGGCaagGGCgGCGUg -3'
miRNA:   3'- -CUGGUC-Ga--GCCGU--UCGa--CCGaCGCGu -5'
24073 5' -59.9 NC_005262.1 + 43393 0.66 0.434483
Target:  5'- uGCgAGCaucggCGGCGAGCUcaacGGCgcgGCGCu -3'
miRNA:   3'- cUGgUCGa----GCCGUUCGA----CCGa--CGCGu -5'
24073 5' -59.9 NC_005262.1 + 13561 0.66 0.424143
Target:  5'- cGACCGuuGCUUGGCAuccgcucGGCUGGaagccgGCGUg -3'
miRNA:   3'- -CUGGU--CGAGCCGU-------UCGACCga----CGCGu -5'
24073 5' -59.9 NC_005262.1 + 24899 0.67 0.419492
Target:  5'- aGGCgAGCUCGGcCAgccggaggacgccgaGGCaUGGCgggaUGCGCAc -3'
miRNA:   3'- -CUGgUCGAGCC-GU---------------UCG-ACCG----ACGCGU- -5'
24073 5' -59.9 NC_005262.1 + 40926 0.67 0.419492
Target:  5'- uGCCGGCUCgaaguccgaGGCAAcGCUGGCgagauagccgacgaGCGCc -3'
miRNA:   3'- cUGGUCGAG---------CCGUU-CGACCGa-------------CGCGu -5'
24073 5' -59.9 NC_005262.1 + 33672 0.67 0.415793
Target:  5'- cGACCAGCagCGGCAcgaucgugGGCUucgcGGCggccgGCGUg -3'
miRNA:   3'- -CUGGUCGa-GCCGU--------UCGA----CCGa----CGCGu -5'
24073 5' -59.9 NC_005262.1 + 57269 0.67 0.415793
Target:  5'- aACCAGCUCGcGC-AGCUcacGGCccgcGUGCAg -3'
miRNA:   3'- cUGGUCGAGC-CGuUCGA---CCGa---CGCGU- -5'
24073 5' -59.9 NC_005262.1 + 42366 0.67 0.410283
Target:  5'- cGACCAGCUCGcggacgucggccgucGCGAGCUcGGaccagUGcCGCAa -3'
miRNA:   3'- -CUGGUCGAGC---------------CGUUCGA-CCg----AC-GCGU- -5'
24073 5' -59.9 NC_005262.1 + 60946 0.67 0.406635
Target:  5'- cGGCCaAGCUCGuGCGGGCacGCcagcGCGCAa -3'
miRNA:   3'- -CUGG-UCGAGC-CGUUCGacCGa---CGCGU- -5'
24073 5' -59.9 NC_005262.1 + 4830 0.67 0.406635
Target:  5'- aGGCC-GCcggCGGCcGGCUGGUucgacugcUGCGCGc -3'
miRNA:   3'- -CUGGuCGa--GCCGuUCGACCG--------ACGCGU- -5'
24073 5' -59.9 NC_005262.1 + 4375 0.67 0.397604
Target:  5'- aGGCCAGCUUcaGGuCGAGC--GUUGCGCGu -3'
miRNA:   3'- -CUGGUCGAG--CC-GUUCGacCGACGCGU- -5'
24073 5' -59.9 NC_005262.1 + 32223 0.67 0.397604
Target:  5'- cGCCGGCgUCGGauuCGAGCUcGGUcuUGCGCu -3'
miRNA:   3'- cUGGUCG-AGCC---GUUCGA-CCG--ACGCGu -5'
24073 5' -59.9 NC_005262.1 + 57045 0.67 0.379934
Target:  5'- aGCUGGC-CGGCAAGgaGGCUGauaccgccgaGCAg -3'
miRNA:   3'- cUGGUCGaGCCGUUCgaCCGACg---------CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.