Results 61 - 64 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24073 | 5' | -59.9 | NC_005262.1 | + | 60740 | 0.75 | 0.113263 |
Target: 5'- cGCUGGCUCGGCGaaGGCUGGgaGaCGCGc -3' miRNA: 3'- cUGGUCGAGCCGU--UCGACCgaC-GCGU- -5' |
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24073 | 5' | -59.9 | NC_005262.1 | + | 52819 | 0.76 | 0.093234 |
Target: 5'- uGGCaggcGCUCGGCGAGCggcugaaGGCUGCGCu -3' miRNA: 3'- -CUGgu--CGAGCCGUUCGa------CCGACGCGu -5' |
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24073 | 5' | -59.9 | NC_005262.1 | + | 46136 | 0.77 | 0.081033 |
Target: 5'- -uCCAGCUCGGCGcGCUGGCggGCGa- -3' miRNA: 3'- cuGGUCGAGCCGUuCGACCGa-CGCgu -5' |
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24073 | 5' | -59.9 | NC_005262.1 | + | 51745 | 1.08 | 0.000359 |
Target: 5'- cGACCAGCUCGGCAAGCUGGCUGCGCAg -3' miRNA: 3'- -CUGGUCGAGCCGUUCGACCGACGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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