Results 41 - 60 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24073 | 5' | -59.9 | NC_005262.1 | + | 63021 | 0.67 | 0.371298 |
Target: 5'- cGGCCAGUacggcaUCGGCAA-CUGGCgcaaguccagcaUGCGCc -3' miRNA: 3'- -CUGGUCG------AGCCGUUcGACCG------------ACGCGu -5' |
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24073 | 5' | -59.9 | NC_005262.1 | + | 36214 | 0.67 | 0.371298 |
Target: 5'- cGAgCGGaUUGGCAGGCUucucGcGCUGCGCGg -3' miRNA: 3'- -CUgGUCgAGCCGUUCGA----C-CGACGCGU- -5' |
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24073 | 5' | -59.9 | NC_005262.1 | + | 52304 | 0.67 | 0.371298 |
Target: 5'- aGCCgAGCUCGGCGAcGC-GGCccaUGUGCu -3' miRNA: 3'- cUGG-UCGAGCCGUU-CGaCCG---ACGCGu -5' |
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24073 | 5' | -59.9 | NC_005262.1 | + | 4375 | 0.67 | 0.397604 |
Target: 5'- aGGCCAGCUUcaGGuCGAGC--GUUGCGCGu -3' miRNA: 3'- -CUGGUCGAG--CC-GUUCGacCGACGCGU- -5' |
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24073 | 5' | -59.9 | NC_005262.1 | + | 32223 | 0.67 | 0.397604 |
Target: 5'- cGCCGGCgUCGGauuCGAGCUcGGUcuUGCGCu -3' miRNA: 3'- cUGGUCG-AGCC---GUUCGA-CCG--ACGCGu -5' |
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24073 | 5' | -59.9 | NC_005262.1 | + | 57269 | 0.67 | 0.415793 |
Target: 5'- aACCAGCUCGcGC-AGCUcacGGCccgcGUGCAg -3' miRNA: 3'- cUGGUCGAGC-CGuUCGA---CCGa---CGCGU- -5' |
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24073 | 5' | -59.9 | NC_005262.1 | + | 60670 | 0.67 | 0.379934 |
Target: 5'- cAUCGcGCUCGGCAuGCUGGC-GaCGCu -3' miRNA: 3'- cUGGU-CGAGCCGUuCGACCGaC-GCGu -5' |
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24073 | 5' | -59.9 | NC_005262.1 | + | 57045 | 0.67 | 0.379934 |
Target: 5'- aGCUGGC-CGGCAAGgaGGCUGauaccgccgaGCAg -3' miRNA: 3'- cUGGUCGaGCCGUUCgaCCGACg---------CGU- -5' |
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24073 | 5' | -59.9 | NC_005262.1 | + | 11992 | 0.67 | 0.374736 |
Target: 5'- cGACCAGCUaCGGCGuggacacguuugcacGGCgcaaucUGGUcGCGCGc -3' miRNA: 3'- -CUGGUCGA-GCCGU---------------UCG------ACCGaCGCGU- -5' |
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24073 | 5' | -59.9 | NC_005262.1 | + | 24899 | 0.67 | 0.419492 |
Target: 5'- aGGCgAGCUCGGcCAgccggaggacgccgaGGCaUGGCgggaUGCGCAc -3' miRNA: 3'- -CUGgUCGAGCC-GU---------------UCG-ACCG----ACGCGU- -5' |
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24073 | 5' | -59.9 | NC_005262.1 | + | 42366 | 0.67 | 0.410283 |
Target: 5'- cGACCAGCUCGcggacgucggccgucGCGAGCUcGGaccagUGcCGCAa -3' miRNA: 3'- -CUGGUCGAGC---------------CGUUCGA-CCg----AC-GCGU- -5' |
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24073 | 5' | -59.9 | NC_005262.1 | + | 4830 | 0.67 | 0.406635 |
Target: 5'- aGGCC-GCcggCGGCcGGCUGGUucgacugcUGCGCGc -3' miRNA: 3'- -CUGGuCGa--GCCGuUCGACCG--------ACGCGU- -5' |
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24073 | 5' | -59.9 | NC_005262.1 | + | 33672 | 0.67 | 0.415793 |
Target: 5'- cGACCAGCagCGGCAcgaucgugGGCUucgcGGCggccgGCGUg -3' miRNA: 3'- -CUGGUCGa-GCCGU--------UCGA----CCGa----CGCGu -5' |
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24073 | 5' | -59.9 | NC_005262.1 | + | 60946 | 0.67 | 0.406635 |
Target: 5'- cGGCCaAGCUCGuGCGGGCacGCcagcGCGCAa -3' miRNA: 3'- -CUGG-UCGAGC-CGUUCGacCGa---CGCGU- -5' |
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24073 | 5' | -59.9 | NC_005262.1 | + | 43393 | 0.66 | 0.434483 |
Target: 5'- uGCgAGCaucggCGGCGAGCUcaacGGCgcgGCGCu -3' miRNA: 3'- cUGgUCGa----GCCGUUCGA----CCGa--CGCGu -5' |
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24073 | 5' | -59.9 | NC_005262.1 | + | 12900 | 0.66 | 0.473268 |
Target: 5'- cAUCAGCccCGGCcuGCUGGacgacgacaacCUGCGCGg -3' miRNA: 3'- cUGGUCGa-GCCGuuCGACC-----------GACGCGU- -5' |
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24073 | 5' | -59.9 | NC_005262.1 | + | 39935 | 0.66 | 0.444009 |
Target: 5'- cGACCGGaCgggCGGCAccGGCaagGGCgGCGUg -3' miRNA: 3'- -CUGGUC-Ga--GCCGU--UCGa--CCGaCGCGu -5' |
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24073 | 5' | -59.9 | NC_005262.1 | + | 10836 | 0.66 | 0.457539 |
Target: 5'- -cCCGGCUCGaGCAccuugccgccggcgaAGCccaGGCgGCGCAg -3' miRNA: 3'- cuGGUCGAGC-CGU---------------UCGa--CCGaCGCGU- -5' |
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24073 | 5' | -59.9 | NC_005262.1 | + | 38539 | 0.66 | 0.473268 |
Target: 5'- uGCCAGaggCGGCGcaggAGCcGGCguUGCGCGc -3' miRNA: 3'- cUGGUCga-GCCGU----UCGaCCG--ACGCGU- -5' |
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24073 | 5' | -59.9 | NC_005262.1 | + | 53220 | 0.66 | 0.453651 |
Target: 5'- cGCCGcGCUgcuccgCGGUAcGCUgcGGCUGCGCGc -3' miRNA: 3'- cUGGU-CGA------GCCGUuCGA--CCGACGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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