miRNA display CGI


Results 1 - 20 of 64 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24073 5' -59.9 NC_005262.1 + 51745 1.08 0.000359
Target:  5'- cGACCAGCUCGGCAAGCUGGCUGCGCAg -3'
miRNA:   3'- -CUGGUCGAGCCGUUCGACCGACGCGU- -5'
24073 5' -59.9 NC_005262.1 + 46136 0.77 0.081033
Target:  5'- -uCCAGCUCGGCGcGCUGGCggGCGa- -3'
miRNA:   3'- cuGGUCGAGCCGUuCGACCGa-CGCgu -5'
24073 5' -59.9 NC_005262.1 + 52819 0.76 0.093234
Target:  5'- uGGCaggcGCUCGGCGAGCggcugaaGGCUGCGCu -3'
miRNA:   3'- -CUGgu--CGAGCCGUUCGa------CCGACGCGu -5'
24073 5' -59.9 NC_005262.1 + 60740 0.75 0.113263
Target:  5'- cGCUGGCUCGGCGaaGGCUGGgaGaCGCGc -3'
miRNA:   3'- cUGGUCGAGCCGU--UCGACCgaC-GCGU- -5'
24073 5' -59.9 NC_005262.1 + 23950 0.74 0.141047
Target:  5'- aGCaAGCUCGGCGAGUgUGGC-GCGCAg -3'
miRNA:   3'- cUGgUCGAGCCGUUCG-ACCGaCGCGU- -5'
24073 5' -59.9 NC_005262.1 + 62899 0.73 0.157172
Target:  5'- cGCCAGCgcgcCGaCGAGCUGGC-GCGCAa -3'
miRNA:   3'- cUGGUCGa---GCcGUUCGACCGaCGCGU- -5'
24073 5' -59.9 NC_005262.1 + 17338 0.73 0.170341
Target:  5'- uGGCCGGCgCGGCAuucggguccGGCgcgGGCgGCGCGg -3'
miRNA:   3'- -CUGGUCGaGCCGU---------UCGa--CCGaCGCGU- -5'
24073 5' -59.9 NC_005262.1 + 5090 0.72 0.176818
Target:  5'- cGACCGGCUCGGCGGuGCgcgcccGGUucacgaugccugccaUGCGCGa -3'
miRNA:   3'- -CUGGUCGAGCCGUU-CGa-----CCG---------------ACGCGU- -5'
24073 5' -59.9 NC_005262.1 + 41644 0.72 0.179661
Target:  5'- -uCCAGCUCGGCGAuGCgGGCaGcCGCGg -3'
miRNA:   3'- cuGGUCGAGCCGUU-CGaCCGaC-GCGU- -5'
24073 5' -59.9 NC_005262.1 + 46165 0.72 0.18943
Target:  5'- uGCCugcuGCUCGGCGAGCUcGcGCUGCugGCGc -3'
miRNA:   3'- cUGGu---CGAGCCGUUCGA-C-CGACG--CGU- -5'
24073 5' -59.9 NC_005262.1 + 30786 0.72 0.18943
Target:  5'- aGGCgCAGCUUGGCGuuGGCUGcCUGCGUc -3'
miRNA:   3'- -CUG-GUCGAGCCGU--UCGACcGACGCGu -5'
24073 5' -59.9 NC_005262.1 + 11639 0.71 0.210373
Target:  5'- cAUCGGCUCGGCGGcGCcGGCgucGCGCu -3'
miRNA:   3'- cUGGUCGAGCCGUU-CGaCCGa--CGCGu -5'
24073 5' -59.9 NC_005262.1 + 16491 0.71 0.221575
Target:  5'- gGACgAGCUgGGCGAggcGCUGggcGCUGCGCu -3'
miRNA:   3'- -CUGgUCGAgCCGUU---CGAC---CGACGCGu -5'
24073 5' -59.9 NC_005262.1 + 6406 0.71 0.22678
Target:  5'- -gUCAGCUCGaucuccaGCGAGUUGaGCUGCGCc -3'
miRNA:   3'- cuGGUCGAGC-------CGUUCGAC-CGACGCGu -5'
24073 5' -59.9 NC_005262.1 + 60213 0.71 0.233281
Target:  5'- cGGCCGGCgaggUCGGCAAGCU-GCUGaaggaauacCGCAu -3'
miRNA:   3'- -CUGGUCG----AGCCGUUCGAcCGAC---------GCGU- -5'
24073 5' -59.9 NC_005262.1 + 350 0.7 0.239327
Target:  5'- uGACCGGCUcCGGCu-GCUGGgUG-GCGa -3'
miRNA:   3'- -CUGGUCGA-GCCGuuCGACCgACgCGU- -5'
24073 5' -59.9 NC_005262.1 + 34123 0.7 0.251811
Target:  5'- cGCgGGUUgGGCGGGCUGcGCggGCGCGg -3'
miRNA:   3'- cUGgUCGAgCCGUUCGAC-CGa-CGCGU- -5'
24073 5' -59.9 NC_005262.1 + 13520 0.7 0.251811
Target:  5'- cACgGGCUCGGCcGGCgcgGGC-GCGCc -3'
miRNA:   3'- cUGgUCGAGCCGuUCGa--CCGaCGCGu -5'
24073 5' -59.9 NC_005262.1 + 58930 0.7 0.264826
Target:  5'- cGGC--GCUCGGCAAGCUGcGCcGCGaCAa -3'
miRNA:   3'- -CUGguCGAGCCGUUCGAC-CGaCGC-GU- -5'
24073 5' -59.9 NC_005262.1 + 27966 0.7 0.264826
Target:  5'- cGACgaaGGC-CGGCAuuGGCUGGCUGgaauCGCAg -3'
miRNA:   3'- -CUGg--UCGaGCCGU--UCGACCGAC----GCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.