Results 61 - 64 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24073 | 5' | -59.9 | NC_005262.1 | + | 40237 | 0.66 | 0.463405 |
Target: 5'- cGCCcGCgcgCGGCGGGCgguUGGUcagucUGCGCGg -3' miRNA: 3'- cUGGuCGa--GCCGUUCG---ACCG-----ACGCGU- -5' |
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24073 | 5' | -59.9 | NC_005262.1 | + | 38539 | 0.66 | 0.473268 |
Target: 5'- uGCCAGaggCGGCGcaggAGCcGGCguUGCGCGc -3' miRNA: 3'- cUGGUCga-GCCGU----UCGaCCG--ACGCGU- -5' |
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24073 | 5' | -59.9 | NC_005262.1 | + | 12900 | 0.66 | 0.473268 |
Target: 5'- cAUCAGCccCGGCcuGCUGGacgacgacaacCUGCGCGg -3' miRNA: 3'- cUGGUCGa-GCCGuuCGACC-----------GACGCGU- -5' |
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24073 | 5' | -59.9 | NC_005262.1 | + | 15762 | 0.66 | 0.473268 |
Target: 5'- uGCgGGCgCGGCcGGCU-GCUGCGUg -3' miRNA: 3'- cUGgUCGaGCCGuUCGAcCGACGCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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