miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24073 5' -59.9 NC_005262.1 + 57045 0.67 0.379934
Target:  5'- aGCUGGC-CGGCAAGgaGGCUGauaccgccgaGCAg -3'
miRNA:   3'- cUGGUCGaGCCGUUCgaCCGACg---------CGU- -5'
24073 5' -59.9 NC_005262.1 + 11992 0.67 0.374736
Target:  5'- cGACCAGCUaCGGCGuggacacguuugcacGGCgcaaucUGGUcGCGCGc -3'
miRNA:   3'- -CUGGUCGA-GCCGU---------------UCG------ACCGaCGCGU- -5'
24073 5' -59.9 NC_005262.1 + 63021 0.67 0.371298
Target:  5'- cGGCCAGUacggcaUCGGCAA-CUGGCgcaaguccagcaUGCGCc -3'
miRNA:   3'- -CUGGUCG------AGCCGUUcGACCG------------ACGCGu -5'
24073 5' -59.9 NC_005262.1 + 36214 0.67 0.371298
Target:  5'- cGAgCGGaUUGGCAGGCUucucGcGCUGCGCGg -3'
miRNA:   3'- -CUgGUCgAGCCGUUCGA----C-CGACGCGU- -5'
24073 5' -59.9 NC_005262.1 + 52304 0.67 0.371298
Target:  5'- aGCCgAGCUCGGCGAcGC-GGCccaUGUGCu -3'
miRNA:   3'- cUGG-UCGAGCCGUU-CGaCCG---ACGCGu -5'
24073 5' -59.9 NC_005262.1 + 5177 0.67 0.371298
Target:  5'- cGGCCGGCgUC-GCGGGCgcgGGCgcggccgGCGCGa -3'
miRNA:   3'- -CUGGUCG-AGcCGUUCGa--CCGa------CGCGU- -5'
24073 5' -59.9 NC_005262.1 + 20180 0.68 0.354432
Target:  5'- cGCCGGUgcCGGCGAGCgucacCUGCGCGa -3'
miRNA:   3'- cUGGUCGa-GCCGUUCGacc--GACGCGU- -5'
24073 5' -59.9 NC_005262.1 + 51250 0.68 0.354432
Target:  5'- cGCCGGCUacgguaaggaCGGCAAGCUgaaccucaccGGCcgccggcugcUGCGCAu -3'
miRNA:   3'- cUGGUCGA----------GCCGUUCGA----------CCG----------ACGCGU- -5'
24073 5' -59.9 NC_005262.1 + 45366 0.68 0.346204
Target:  5'- aACCAGCaauacagcaccUCGGguAGCaucugGGCgGCGCAg -3'
miRNA:   3'- cUGGUCG-----------AGCCguUCGa----CCGaCGCGU- -5'
24073 5' -59.9 NC_005262.1 + 41560 0.68 0.338113
Target:  5'- aGGCCGGC-CGGCGug--GGCgGCGCGg -3'
miRNA:   3'- -CUGGUCGaGCCGUucgaCCGaCGCGU- -5'
24073 5' -59.9 NC_005262.1 + 52733 0.68 0.338113
Target:  5'- uGGCCgcucgGGCUCaGGCGAcGCUGcggccuguuGCUGCGCGc -3'
miRNA:   3'- -CUGG-----UCGAG-CCGUU-CGAC---------CGACGCGU- -5'
24073 5' -59.9 NC_005262.1 + 58627 0.68 0.338113
Target:  5'- cACCgucaGGCUCGGCAgucgAGCggccgGGC-GCGCGa -3'
miRNA:   3'- cUGG----UCGAGCCGU----UCGa----CCGaCGCGU- -5'
24073 5' -59.9 NC_005262.1 + 17263 0.68 0.330162
Target:  5'- cGGCCGGCgcCGcGCuGGGCU-GCUGCGCGg -3'
miRNA:   3'- -CUGGUCGa-GC-CG-UUCGAcCGACGCGU- -5'
24073 5' -59.9 NC_005262.1 + 24978 0.68 0.322348
Target:  5'- aGGCCGGCUUGGUcgAGGC-GGCauucgaGCGCGg -3'
miRNA:   3'- -CUGGUCGAGCCG--UUCGaCCGa-----CGCGU- -5'
24073 5' -59.9 NC_005262.1 + 50122 0.69 0.313914
Target:  5'- cGGCCGagcGCUCGcugaccgaguggaGCGAGcCUGaGCUGCGCGa -3'
miRNA:   3'- -CUGGU---CGAGC-------------CGUUC-GAC-CGACGCGU- -5'
24073 5' -59.9 NC_005262.1 + 898 0.69 0.307139
Target:  5'- cGCCAGCucgUCGGCGcGCUGGCggGUGa- -3'
miRNA:   3'- cUGGUCG---AGCCGUuCGACCGa-CGCgu -5'
24073 5' -59.9 NC_005262.1 + 4156 0.69 0.307139
Target:  5'- cGACCAGCgcgaGGaGAGaCUGGC-GCGCGa -3'
miRNA:   3'- -CUGGUCGag--CCgUUC-GACCGaCGCGU- -5'
24073 5' -59.9 NC_005262.1 + 9662 0.69 0.299742
Target:  5'- uGAUguGCUCGaGCGAGUaGGCgaggGCGCc -3'
miRNA:   3'- -CUGguCGAGC-CGUUCGaCCGa---CGCGu -5'
24073 5' -59.9 NC_005262.1 + 13981 0.69 0.292484
Target:  5'- gGGCCGGUg-GGCGAacGCUGGUUGUGUg -3'
miRNA:   3'- -CUGGUCGagCCGUU--CGACCGACGCGu -5'
24073 5' -59.9 NC_005262.1 + 20574 0.69 0.292484
Target:  5'- cGAgCAGCcCGGCGAGCaGcGCgcgGCGCGc -3'
miRNA:   3'- -CUgGUCGaGCCGUUCGaC-CGa--CGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.