miRNA display CGI


Results 41 - 60 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24073 5' -59.9 NC_005262.1 + 41560 0.68 0.338113
Target:  5'- aGGCCGGC-CGGCGug--GGCgGCGCGg -3'
miRNA:   3'- -CUGGUCGaGCCGUucgaCCGaCGCGU- -5'
24073 5' -59.9 NC_005262.1 + 41644 0.72 0.179661
Target:  5'- -uCCAGCUCGGCGAuGCgGGCaGcCGCGg -3'
miRNA:   3'- cuGGUCGAGCCGUU-CGaCCGaC-GCGU- -5'
24073 5' -59.9 NC_005262.1 + 42366 0.67 0.410283
Target:  5'- cGACCAGCUCGcggacgucggccgucGCGAGCUcGGaccagUGcCGCAa -3'
miRNA:   3'- -CUGGUCGAGC---------------CGUUCGA-CCg----AC-GCGU- -5'
24073 5' -59.9 NC_005262.1 + 43393 0.66 0.434483
Target:  5'- uGCgAGCaucggCGGCGAGCUcaacGGCgcgGCGCu -3'
miRNA:   3'- cUGgUCGa----GCCGUUCGA----CCGa--CGCGu -5'
24073 5' -59.9 NC_005262.1 + 45366 0.68 0.346204
Target:  5'- aACCAGCaauacagcaccUCGGguAGCaucugGGCgGCGCAg -3'
miRNA:   3'- cUGGUCG-----------AGCCguUCGa----CCGaCGCGU- -5'
24073 5' -59.9 NC_005262.1 + 46136 0.77 0.081033
Target:  5'- -uCCAGCUCGGCGcGCUGGCggGCGa- -3'
miRNA:   3'- cuGGUCGAGCCGUuCGACCGa-CGCgu -5'
24073 5' -59.9 NC_005262.1 + 46165 0.72 0.18943
Target:  5'- uGCCugcuGCUCGGCGAGCUcGcGCUGCugGCGc -3'
miRNA:   3'- cUGGu---CGAGCCGUUCGA-C-CGACG--CGU- -5'
24073 5' -59.9 NC_005262.1 + 50122 0.69 0.313914
Target:  5'- cGGCCGagcGCUCGcugaccgaguggaGCGAGcCUGaGCUGCGCGa -3'
miRNA:   3'- -CUGGU---CGAGC-------------CGUUC-GAC-CGACGCGU- -5'
24073 5' -59.9 NC_005262.1 + 51250 0.68 0.354432
Target:  5'- cGCCGGCUacgguaaggaCGGCAAGCUgaaccucaccGGCcgccggcugcUGCGCAu -3'
miRNA:   3'- cUGGUCGA----------GCCGUUCGA----------CCG----------ACGCGU- -5'
24073 5' -59.9 NC_005262.1 + 51745 1.08 0.000359
Target:  5'- cGACCAGCUCGGCAAGCUGGCUGCGCAg -3'
miRNA:   3'- -CUGGUCGAGCCGUUCGACCGACGCGU- -5'
24073 5' -59.9 NC_005262.1 + 52304 0.67 0.371298
Target:  5'- aGCCgAGCUCGGCGAcGC-GGCccaUGUGCu -3'
miRNA:   3'- cUGG-UCGAGCCGUU-CGaCCG---ACGCGu -5'
24073 5' -59.9 NC_005262.1 + 52733 0.68 0.338113
Target:  5'- uGGCCgcucgGGCUCaGGCGAcGCUGcggccuguuGCUGCGCGc -3'
miRNA:   3'- -CUGG-----UCGAG-CCGUU-CGAC---------CGACGCGU- -5'
24073 5' -59.9 NC_005262.1 + 52819 0.76 0.093234
Target:  5'- uGGCaggcGCUCGGCGAGCggcugaaGGCUGCGCu -3'
miRNA:   3'- -CUGgu--CGAGCCGUUCGa------CCGACGCGu -5'
24073 5' -59.9 NC_005262.1 + 53220 0.66 0.453651
Target:  5'- cGCCGcGCUgcuccgCGGUAcGCUgcGGCUGCGCGc -3'
miRNA:   3'- cUGGU-CGA------GCCGUuCGA--CCGACGCGU- -5'
24073 5' -59.9 NC_005262.1 + 57045 0.67 0.379934
Target:  5'- aGCUGGC-CGGCAAGgaGGCUGauaccgccgaGCAg -3'
miRNA:   3'- cUGGUCGaGCCGUUCgaCCGACg---------CGU- -5'
24073 5' -59.9 NC_005262.1 + 57269 0.67 0.415793
Target:  5'- aACCAGCUCGcGC-AGCUcacGGCccgcGUGCAg -3'
miRNA:   3'- cUGGUCGAGC-CGuUCGA---CCGa---CGCGU- -5'
24073 5' -59.9 NC_005262.1 + 58627 0.68 0.338113
Target:  5'- cACCgucaGGCUCGGCAgucgAGCggccgGGC-GCGCGa -3'
miRNA:   3'- cUGG----UCGAGCCGU----UCGa----CCGaCGCGU- -5'
24073 5' -59.9 NC_005262.1 + 58930 0.7 0.264826
Target:  5'- cGGC--GCUCGGCAAGCUGcGCcGCGaCAa -3'
miRNA:   3'- -CUGguCGAGCCGUUCGAC-CGaCGC-GU- -5'
24073 5' -59.9 NC_005262.1 + 60213 0.71 0.233281
Target:  5'- cGGCCGGCgaggUCGGCAAGCU-GCUGaaggaauacCGCAu -3'
miRNA:   3'- -CUGGUCG----AGCCGUUCGAcCGAC---------GCGU- -5'
24073 5' -59.9 NC_005262.1 + 60670 0.67 0.379934
Target:  5'- cAUCGcGCUCGGCAuGCUGGC-GaCGCu -3'
miRNA:   3'- cUGGU-CGAGCCGUuCGACCGaC-GCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.