Results 1 - 20 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24073 | 5' | -59.9 | NC_005262.1 | + | 63021 | 0.67 | 0.371298 |
Target: 5'- cGGCCAGUacggcaUCGGCAA-CUGGCgcaaguccagcaUGCGCc -3' miRNA: 3'- -CUGGUCG------AGCCGUUcGACCG------------ACGCGu -5' |
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24073 | 5' | -59.9 | NC_005262.1 | + | 62899 | 0.73 | 0.157172 |
Target: 5'- cGCCAGCgcgcCGaCGAGCUGGC-GCGCAa -3' miRNA: 3'- cUGGUCGa---GCcGUUCGACCGaCGCGU- -5' |
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24073 | 5' | -59.9 | NC_005262.1 | + | 60946 | 0.67 | 0.406635 |
Target: 5'- cGGCCaAGCUCGuGCGGGCacGCcagcGCGCAa -3' miRNA: 3'- -CUGG-UCGAGC-CGUUCGacCGa---CGCGU- -5' |
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24073 | 5' | -59.9 | NC_005262.1 | + | 60740 | 0.75 | 0.113263 |
Target: 5'- cGCUGGCUCGGCGaaGGCUGGgaGaCGCGc -3' miRNA: 3'- cUGGUCGAGCCGU--UCGACCgaC-GCGU- -5' |
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24073 | 5' | -59.9 | NC_005262.1 | + | 60670 | 0.67 | 0.379934 |
Target: 5'- cAUCGcGCUCGGCAuGCUGGC-GaCGCu -3' miRNA: 3'- cUGGU-CGAGCCGUuCGACCGaC-GCGu -5' |
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24073 | 5' | -59.9 | NC_005262.1 | + | 60213 | 0.71 | 0.233281 |
Target: 5'- cGGCCGGCgaggUCGGCAAGCU-GCUGaaggaauacCGCAu -3' miRNA: 3'- -CUGGUCG----AGCCGUUCGAcCGAC---------GCGU- -5' |
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24073 | 5' | -59.9 | NC_005262.1 | + | 58930 | 0.7 | 0.264826 |
Target: 5'- cGGC--GCUCGGCAAGCUGcGCcGCGaCAa -3' miRNA: 3'- -CUGguCGAGCCGUUCGAC-CGaCGC-GU- -5' |
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24073 | 5' | -59.9 | NC_005262.1 | + | 58627 | 0.68 | 0.338113 |
Target: 5'- cACCgucaGGCUCGGCAgucgAGCggccgGGC-GCGCGa -3' miRNA: 3'- cUGG----UCGAGCCGU----UCGa----CCGaCGCGU- -5' |
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24073 | 5' | -59.9 | NC_005262.1 | + | 57269 | 0.67 | 0.415793 |
Target: 5'- aACCAGCUCGcGC-AGCUcacGGCccgcGUGCAg -3' miRNA: 3'- cUGGUCGAGC-CGuUCGA---CCGa---CGCGU- -5' |
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24073 | 5' | -59.9 | NC_005262.1 | + | 57045 | 0.67 | 0.379934 |
Target: 5'- aGCUGGC-CGGCAAGgaGGCUGauaccgccgaGCAg -3' miRNA: 3'- cUGGUCGaGCCGUUCgaCCGACg---------CGU- -5' |
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24073 | 5' | -59.9 | NC_005262.1 | + | 53220 | 0.66 | 0.453651 |
Target: 5'- cGCCGcGCUgcuccgCGGUAcGCUgcGGCUGCGCGc -3' miRNA: 3'- cUGGU-CGA------GCCGUuCGA--CCGACGCGU- -5' |
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24073 | 5' | -59.9 | NC_005262.1 | + | 52819 | 0.76 | 0.093234 |
Target: 5'- uGGCaggcGCUCGGCGAGCggcugaaGGCUGCGCu -3' miRNA: 3'- -CUGgu--CGAGCCGUUCGa------CCGACGCGu -5' |
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24073 | 5' | -59.9 | NC_005262.1 | + | 52733 | 0.68 | 0.338113 |
Target: 5'- uGGCCgcucgGGCUCaGGCGAcGCUGcggccuguuGCUGCGCGc -3' miRNA: 3'- -CUGG-----UCGAG-CCGUU-CGAC---------CGACGCGU- -5' |
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24073 | 5' | -59.9 | NC_005262.1 | + | 52304 | 0.67 | 0.371298 |
Target: 5'- aGCCgAGCUCGGCGAcGC-GGCccaUGUGCu -3' miRNA: 3'- cUGG-UCGAGCCGUU-CGaCCG---ACGCGu -5' |
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24073 | 5' | -59.9 | NC_005262.1 | + | 51745 | 1.08 | 0.000359 |
Target: 5'- cGACCAGCUCGGCAAGCUGGCUGCGCAg -3' miRNA: 3'- -CUGGUCGAGCCGUUCGACCGACGCGU- -5' |
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24073 | 5' | -59.9 | NC_005262.1 | + | 51250 | 0.68 | 0.354432 |
Target: 5'- cGCCGGCUacgguaaggaCGGCAAGCUgaaccucaccGGCcgccggcugcUGCGCAu -3' miRNA: 3'- cUGGUCGA----------GCCGUUCGA----------CCG----------ACGCGU- -5' |
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24073 | 5' | -59.9 | NC_005262.1 | + | 50122 | 0.69 | 0.313914 |
Target: 5'- cGGCCGagcGCUCGcugaccgaguggaGCGAGcCUGaGCUGCGCGa -3' miRNA: 3'- -CUGGU---CGAGC-------------CGUUC-GAC-CGACGCGU- -5' |
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24073 | 5' | -59.9 | NC_005262.1 | + | 46165 | 0.72 | 0.18943 |
Target: 5'- uGCCugcuGCUCGGCGAGCUcGcGCUGCugGCGc -3' miRNA: 3'- cUGGu---CGAGCCGUUCGA-C-CGACG--CGU- -5' |
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24073 | 5' | -59.9 | NC_005262.1 | + | 46136 | 0.77 | 0.081033 |
Target: 5'- -uCCAGCUCGGCGcGCUGGCggGCGa- -3' miRNA: 3'- cuGGUCGAGCCGUuCGACCGa-CGCgu -5' |
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24073 | 5' | -59.9 | NC_005262.1 | + | 45366 | 0.68 | 0.346204 |
Target: 5'- aACCAGCaauacagcaccUCGGguAGCaucugGGCgGCGCAg -3' miRNA: 3'- cUGGUCG-----------AGCCguUCGa----CCGaCGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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