miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24073 5' -59.9 NC_005262.1 + 43393 0.66 0.434483
Target:  5'- uGCgAGCaucggCGGCGAGCUcaacGGCgcgGCGCu -3'
miRNA:   3'- cUGgUCGa----GCCGUUCGA----CCGa--CGCGu -5'
24073 5' -59.9 NC_005262.1 + 42366 0.67 0.410283
Target:  5'- cGACCAGCUCGcggacgucggccgucGCGAGCUcGGaccagUGcCGCAa -3'
miRNA:   3'- -CUGGUCGAGC---------------CGUUCGA-CCg----AC-GCGU- -5'
24073 5' -59.9 NC_005262.1 + 41644 0.72 0.179661
Target:  5'- -uCCAGCUCGGCGAuGCgGGCaGcCGCGg -3'
miRNA:   3'- cuGGUCGAGCCGUU-CGaCCGaC-GCGU- -5'
24073 5' -59.9 NC_005262.1 + 41560 0.68 0.338113
Target:  5'- aGGCCGGC-CGGCGug--GGCgGCGCGg -3'
miRNA:   3'- -CUGGUCGaGCCGUucgaCCGaCGCGU- -5'
24073 5' -59.9 NC_005262.1 + 40926 0.67 0.419492
Target:  5'- uGCCGGCUCgaaguccgaGGCAAcGCUGGCgagauagccgacgaGCGCc -3'
miRNA:   3'- cUGGUCGAG---------CCGUU-CGACCGa-------------CGCGu -5'
24073 5' -59.9 NC_005262.1 + 40237 0.66 0.463405
Target:  5'- cGCCcGCgcgCGGCGGGCgguUGGUcagucUGCGCGg -3'
miRNA:   3'- cUGGuCGa--GCCGUUCG---ACCG-----ACGCGU- -5'
24073 5' -59.9 NC_005262.1 + 39935 0.66 0.444009
Target:  5'- cGACCGGaCgggCGGCAccGGCaagGGCgGCGUg -3'
miRNA:   3'- -CUGGUC-Ga--GCCGU--UCGa--CCGaCGCGu -5'
24073 5' -59.9 NC_005262.1 + 38539 0.66 0.473268
Target:  5'- uGCCAGaggCGGCGcaggAGCcGGCguUGCGCGc -3'
miRNA:   3'- cUGGUCga-GCCGU----UCGaCCG--ACGCGU- -5'
24073 5' -59.9 NC_005262.1 + 36214 0.67 0.371298
Target:  5'- cGAgCGGaUUGGCAGGCUucucGcGCUGCGCGg -3'
miRNA:   3'- -CUgGUCgAGCCGUUCGA----C-CGACGCGU- -5'
24073 5' -59.9 NC_005262.1 + 34618 0.69 0.292484
Target:  5'- cAUCAGCUCGGCGAcggccgccugacGCaUGGUcGCGCGc -3'
miRNA:   3'- cUGGUCGAGCCGUU------------CG-ACCGaCGCGU- -5'
24073 5' -59.9 NC_005262.1 + 34123 0.7 0.251811
Target:  5'- cGCgGGUUgGGCGGGCUGcGCggGCGCGg -3'
miRNA:   3'- cUGgUCGAgCCGUUCGAC-CGa-CGCGU- -5'
24073 5' -59.9 NC_005262.1 + 33672 0.67 0.415793
Target:  5'- cGACCAGCagCGGCAcgaucgugGGCUucgcGGCggccgGCGUg -3'
miRNA:   3'- -CUGGUCGa-GCCGU--------UCGA----CCGa----CGCGu -5'
24073 5' -59.9 NC_005262.1 + 32223 0.67 0.397604
Target:  5'- cGCCGGCgUCGGauuCGAGCUcGGUcuUGCGCu -3'
miRNA:   3'- cUGGUCG-AGCC---GUUCGA-CCG--ACGCGu -5'
24073 5' -59.9 NC_005262.1 + 30786 0.72 0.18943
Target:  5'- aGGCgCAGCUUGGCGuuGGCUGcCUGCGUc -3'
miRNA:   3'- -CUG-GUCGAGCCGU--UCGACcGACGCGu -5'
24073 5' -59.9 NC_005262.1 + 27966 0.7 0.264826
Target:  5'- cGACgaaGGC-CGGCAuuGGCUGGCUGgaauCGCAg -3'
miRNA:   3'- -CUGg--UCGaGCCGU--UCGACCGAC----GCGU- -5'
24073 5' -59.9 NC_005262.1 + 24978 0.68 0.322348
Target:  5'- aGGCCGGCUUGGUcgAGGC-GGCauucgaGCGCGg -3'
miRNA:   3'- -CUGGUCGAGCCG--UUCGaCCGa-----CGCGU- -5'
24073 5' -59.9 NC_005262.1 + 24899 0.67 0.419492
Target:  5'- aGGCgAGCUCGGcCAgccggaggacgccgaGGCaUGGCgggaUGCGCAc -3'
miRNA:   3'- -CUGgUCGAGCC-GU---------------UCG-ACCG----ACGCGU- -5'
24073 5' -59.9 NC_005262.1 + 23950 0.74 0.141047
Target:  5'- aGCaAGCUCGGCGAGUgUGGC-GCGCAg -3'
miRNA:   3'- cUGgUCGAGCCGUUCG-ACCGaCGCGU- -5'
24073 5' -59.9 NC_005262.1 + 20574 0.69 0.292484
Target:  5'- cGAgCAGCcCGGCGAGCaGcGCgcgGCGCGc -3'
miRNA:   3'- -CUgGUCGaGCCGUUCGaC-CGa--CGCGU- -5'
24073 5' -59.9 NC_005262.1 + 20180 0.68 0.354432
Target:  5'- cGCCGGUgcCGGCGAGCgucacCUGCGCGa -3'
miRNA:   3'- cUGGUCGa-GCCGUUCGacc--GACGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.