miRNA display CGI


Results 41 - 60 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24073 5' -59.9 NC_005262.1 + 19279 0.69 0.292484
Target:  5'- cGAUCAGCgCGGCGaucaGGCUGGCccagaugGCGUu -3'
miRNA:   3'- -CUGGUCGaGCCGU----UCGACCGa------CGCGu -5'
24073 5' -59.9 NC_005262.1 + 17338 0.73 0.170341
Target:  5'- uGGCCGGCgCGGCAuucggguccGGCgcgGGCgGCGCGg -3'
miRNA:   3'- -CUGGUCGaGCCGU---------UCGa--CCGaCGCGU- -5'
24073 5' -59.9 NC_005262.1 + 17263 0.68 0.330162
Target:  5'- cGGCCGGCgcCGcGCuGGGCU-GCUGCGCGg -3'
miRNA:   3'- -CUGGUCGa-GC-CG-UUCGAcCGACGCGU- -5'
24073 5' -59.9 NC_005262.1 + 16491 0.71 0.221575
Target:  5'- gGACgAGCUgGGCGAggcGCUGggcGCUGCGCu -3'
miRNA:   3'- -CUGgUCGAgCCGUU---CGAC---CGACGCGu -5'
24073 5' -59.9 NC_005262.1 + 15762 0.66 0.473268
Target:  5'- uGCgGGCgCGGCcGGCU-GCUGCGUg -3'
miRNA:   3'- cUGgUCGaGCCGuUCGAcCGACGCGu -5'
24073 5' -59.9 NC_005262.1 + 13981 0.69 0.292484
Target:  5'- gGGCCGGUg-GGCGAacGCUGGUUGUGUg -3'
miRNA:   3'- -CUGGUCGagCCGUU--CGACCGACGCGu -5'
24073 5' -59.9 NC_005262.1 + 13561 0.66 0.424143
Target:  5'- cGACCGuuGCUUGGCAuccgcucGGCUGGaagccgGCGUg -3'
miRNA:   3'- -CUGGU--CGAGCCGU-------UCGACCga----CGCGu -5'
24073 5' -59.9 NC_005262.1 + 13520 0.7 0.251811
Target:  5'- cACgGGCUCGGCcGGCgcgGGC-GCGCc -3'
miRNA:   3'- cUGgUCGAGCCGuUCGa--CCGaCGCGu -5'
24073 5' -59.9 NC_005262.1 + 12900 0.66 0.473268
Target:  5'- cAUCAGCccCGGCcuGCUGGacgacgacaacCUGCGCGg -3'
miRNA:   3'- cUGGUCGa-GCCGuuCGACC-----------GACGCGU- -5'
24073 5' -59.9 NC_005262.1 + 11992 0.67 0.374736
Target:  5'- cGACCAGCUaCGGCGuggacacguuugcacGGCgcaaucUGGUcGCGCGc -3'
miRNA:   3'- -CUGGUCGA-GCCGU---------------UCG------ACCGaCGCGU- -5'
24073 5' -59.9 NC_005262.1 + 11639 0.71 0.210373
Target:  5'- cAUCGGCUCGGCGGcGCcGGCgucGCGCu -3'
miRNA:   3'- cUGGUCGAGCCGUU-CGaCCGa--CGCGu -5'
24073 5' -59.9 NC_005262.1 + 10836 0.66 0.457539
Target:  5'- -cCCGGCUCGaGCAccuugccgccggcgaAGCccaGGCgGCGCAg -3'
miRNA:   3'- cuGGUCGAGC-CGU---------------UCGa--CCGaCGCGU- -5'
24073 5' -59.9 NC_005262.1 + 10437 0.7 0.264826
Target:  5'- uGACCGcaugcagauGCUCGGCAAGCcgGGCggaaGcCGCGa -3'
miRNA:   3'- -CUGGU---------CGAGCCGUUCGa-CCGa---C-GCGU- -5'
24073 5' -59.9 NC_005262.1 + 9662 0.69 0.299742
Target:  5'- uGAUguGCUCGaGCGAGUaGGCgaggGCGCc -3'
miRNA:   3'- -CUGguCGAGC-CGUUCGaCCGa---CGCGu -5'
24073 5' -59.9 NC_005262.1 + 8160 0.66 0.453651
Target:  5'- cGGCCacgAGCgcgCGGCccGGCUucuuGCUGCGCAg -3'
miRNA:   3'- -CUGG---UCGa--GCCGu-UCGAc---CGACGCGU- -5'
24073 5' -59.9 NC_005262.1 + 6406 0.71 0.22678
Target:  5'- -gUCAGCUCGaucuccaGCGAGUUGaGCUGCGCc -3'
miRNA:   3'- cuGGUCGAGC-------CGUUCGAC-CGACGCGu -5'
24073 5' -59.9 NC_005262.1 + 5177 0.67 0.371298
Target:  5'- cGGCCGGCgUC-GCGGGCgcgGGCgcggccgGCGCGa -3'
miRNA:   3'- -CUGGUCG-AGcCGUUCGa--CCGa------CGCGU- -5'
24073 5' -59.9 NC_005262.1 + 5090 0.72 0.176818
Target:  5'- cGACCGGCUCGGCGGuGCgcgcccGGUucacgaugccugccaUGCGCGa -3'
miRNA:   3'- -CUGGUCGAGCCGUU-CGa-----CCG---------------ACGCGU- -5'
24073 5' -59.9 NC_005262.1 + 5045 0.69 0.278382
Target:  5'- cGGCCGGCgccugaUCGGCGGGCaggcccgcGGCggcgGCGCGu -3'
miRNA:   3'- -CUGGUCG------AGCCGUUCGa-------CCGa---CGCGU- -5'
24073 5' -59.9 NC_005262.1 + 4830 0.67 0.406635
Target:  5'- aGGCC-GCcggCGGCcGGCUGGUucgacugcUGCGCGc -3'
miRNA:   3'- -CUGGuCGa--GCCGuUCGACCG--------ACGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.