miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24073 5' -59.9 NC_005262.1 + 5177 0.67 0.371298
Target:  5'- cGGCCGGCgUC-GCGGGCgcgGGCgcggccgGCGCGa -3'
miRNA:   3'- -CUGGUCG-AGcCGUUCGa--CCGa------CGCGU- -5'
24073 5' -59.9 NC_005262.1 + 5045 0.69 0.278382
Target:  5'- cGGCCGGCgccugaUCGGCGGGCaggcccgcGGCggcgGCGCGu -3'
miRNA:   3'- -CUGGUCG------AGCCGUUCGa-------CCGa---CGCGU- -5'
24073 5' -59.9 NC_005262.1 + 13981 0.69 0.292484
Target:  5'- gGGCCGGUg-GGCGAacGCUGGUUGUGUg -3'
miRNA:   3'- -CUGGUCGagCCGUU--CGACCGACGCGu -5'
24073 5' -59.9 NC_005262.1 + 20574 0.69 0.292484
Target:  5'- cGAgCAGCcCGGCGAGCaGcGCgcgGCGCGc -3'
miRNA:   3'- -CUgGUCGaGCCGUUCGaC-CGa--CGCGU- -5'
24073 5' -59.9 NC_005262.1 + 50122 0.69 0.313914
Target:  5'- cGGCCGagcGCUCGcugaccgaguggaGCGAGcCUGaGCUGCGCGa -3'
miRNA:   3'- -CUGGU---CGAGC-------------CGUUC-GAC-CGACGCGU- -5'
24073 5' -59.9 NC_005262.1 + 24978 0.68 0.322348
Target:  5'- aGGCCGGCUUGGUcgAGGC-GGCauucgaGCGCGg -3'
miRNA:   3'- -CUGGUCGAGCCG--UUCGaCCGa-----CGCGU- -5'
24073 5' -59.9 NC_005262.1 + 58627 0.68 0.338113
Target:  5'- cACCgucaGGCUCGGCAgucgAGCggccgGGC-GCGCGa -3'
miRNA:   3'- cUGG----UCGAGCCGU----UCGa----CCGaCGCGU- -5'
24073 5' -59.9 NC_005262.1 + 45366 0.68 0.346204
Target:  5'- aACCAGCaauacagcaccUCGGguAGCaucugGGCgGCGCAg -3'
miRNA:   3'- cUGGUCG-----------AGCCguUCGa----CCGaCGCGU- -5'
24073 5' -59.9 NC_005262.1 + 51250 0.68 0.354432
Target:  5'- cGCCGGCUacgguaaggaCGGCAAGCUgaaccucaccGGCcgccggcugcUGCGCAu -3'
miRNA:   3'- cUGGUCGA----------GCCGUUCGA----------CCG----------ACGCGU- -5'
24073 5' -59.9 NC_005262.1 + 27966 0.7 0.264826
Target:  5'- cGACgaaGGC-CGGCAuuGGCUGGCUGgaauCGCAg -3'
miRNA:   3'- -CUGg--UCGaGCCGU--UCGACCGAC----GCGU- -5'
24073 5' -59.9 NC_005262.1 + 10437 0.7 0.264826
Target:  5'- uGACCGcaugcagauGCUCGGCAAGCcgGGCggaaGcCGCGa -3'
miRNA:   3'- -CUGGU---------CGAGCCGUUCGa-CCGa---C-GCGU- -5'
24073 5' -59.9 NC_005262.1 + 350 0.7 0.239327
Target:  5'- uGACCGGCUcCGGCu-GCUGGgUG-GCGa -3'
miRNA:   3'- -CUGGUCGA-GCCGuuCGACCgACgCGU- -5'
24073 5' -59.9 NC_005262.1 + 52819 0.76 0.093234
Target:  5'- uGGCaggcGCUCGGCGAGCggcugaaGGCUGCGCu -3'
miRNA:   3'- -CUGgu--CGAGCCGUUCGa------CCGACGCGu -5'
24073 5' -59.9 NC_005262.1 + 60740 0.75 0.113263
Target:  5'- cGCUGGCUCGGCGaaGGCUGGgaGaCGCGc -3'
miRNA:   3'- cUGGUCGAGCCGU--UCGACCgaC-GCGU- -5'
24073 5' -59.9 NC_005262.1 + 23950 0.74 0.141047
Target:  5'- aGCaAGCUCGGCGAGUgUGGC-GCGCAg -3'
miRNA:   3'- cUGgUCGAGCCGUUCG-ACCGaCGCGU- -5'
24073 5' -59.9 NC_005262.1 + 62899 0.73 0.157172
Target:  5'- cGCCAGCgcgcCGaCGAGCUGGC-GCGCAa -3'
miRNA:   3'- cUGGUCGa---GCcGUUCGACCGaCGCGU- -5'
24073 5' -59.9 NC_005262.1 + 5090 0.72 0.176818
Target:  5'- cGACCGGCUCGGCGGuGCgcgcccGGUucacgaugccugccaUGCGCGa -3'
miRNA:   3'- -CUGGUCGAGCCGUU-CGa-----CCG---------------ACGCGU- -5'
24073 5' -59.9 NC_005262.1 + 11639 0.71 0.210373
Target:  5'- cAUCGGCUCGGCGGcGCcGGCgucGCGCu -3'
miRNA:   3'- cUGGUCGAGCCGUU-CGaCCGa--CGCGu -5'
24073 5' -59.9 NC_005262.1 + 16491 0.71 0.221575
Target:  5'- gGACgAGCUgGGCGAggcGCUGggcGCUGCGCu -3'
miRNA:   3'- -CUGgUCGAgCCGUU---CGAC---CGACGCGu -5'
24073 5' -59.9 NC_005262.1 + 60213 0.71 0.233281
Target:  5'- cGGCCGGCgaggUCGGCAAGCU-GCUGaaggaauacCGCAu -3'
miRNA:   3'- -CUGGUCG----AGCCGUUCGAcCGAC---------GCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.