miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24073 5' -59.9 NC_005262.1 + 62899 0.73 0.157172
Target:  5'- cGCCAGCgcgcCGaCGAGCUGGC-GCGCAa -3'
miRNA:   3'- cUGGUCGa---GCcGUUCGACCGaCGCGU- -5'
24073 5' -59.9 NC_005262.1 + 5090 0.72 0.176818
Target:  5'- cGACCGGCUCGGCGGuGCgcgcccGGUucacgaugccugccaUGCGCGa -3'
miRNA:   3'- -CUGGUCGAGCCGUU-CGa-----CCG---------------ACGCGU- -5'
24073 5' -59.9 NC_005262.1 + 11639 0.71 0.210373
Target:  5'- cAUCGGCUCGGCGGcGCcGGCgucGCGCu -3'
miRNA:   3'- cUGGUCGAGCCGUU-CGaCCGa--CGCGu -5'
24073 5' -59.9 NC_005262.1 + 16491 0.71 0.221575
Target:  5'- gGACgAGCUgGGCGAggcGCUGggcGCUGCGCu -3'
miRNA:   3'- -CUGgUCGAgCCGUU---CGAC---CGACGCGu -5'
24073 5' -59.9 NC_005262.1 + 13981 0.69 0.292484
Target:  5'- gGGCCGGUg-GGCGAacGCUGGUUGUGUg -3'
miRNA:   3'- -CUGGUCGagCCGUU--CGACCGACGCGu -5'
24073 5' -59.9 NC_005262.1 + 5045 0.69 0.278382
Target:  5'- cGGCCGGCgccugaUCGGCGGGCaggcccgcGGCggcgGCGCGu -3'
miRNA:   3'- -CUGGUCG------AGCCGUUCGa-------CCGa---CGCGU- -5'
24073 5' -59.9 NC_005262.1 + 27966 0.7 0.264826
Target:  5'- cGACgaaGGC-CGGCAuuGGCUGGCUGgaauCGCAg -3'
miRNA:   3'- -CUGg--UCGaGCCGU--UCGACCGAC----GCGU- -5'
24073 5' -59.9 NC_005262.1 + 10437 0.7 0.264826
Target:  5'- uGACCGcaugcagauGCUCGGCAAGCcgGGCggaaGcCGCGa -3'
miRNA:   3'- -CUGGU---------CGAGCCGUUCGa-CCGa---C-GCGU- -5'
24073 5' -59.9 NC_005262.1 + 350 0.7 0.239327
Target:  5'- uGACCGGCUcCGGCu-GCUGGgUG-GCGa -3'
miRNA:   3'- -CUGGUCGA-GCCGuuCGACCgACgCGU- -5'
24073 5' -59.9 NC_005262.1 + 60213 0.71 0.233281
Target:  5'- cGGCCGGCgaggUCGGCAAGCU-GCUGaaggaauacCGCAu -3'
miRNA:   3'- -CUGGUCG----AGCCGUUCGAcCGAC---------GCGU- -5'
24073 5' -59.9 NC_005262.1 + 42366 0.67 0.410283
Target:  5'- cGACCAGCUCGcggacgucggccgucGCGAGCUcGGaccagUGcCGCAa -3'
miRNA:   3'- -CUGGUCGAGC---------------CGUUCGA-CCg----AC-GCGU- -5'
24073 5' -59.9 NC_005262.1 + 33672 0.67 0.415793
Target:  5'- cGACCAGCagCGGCAcgaucgugGGCUucgcGGCggccgGCGUg -3'
miRNA:   3'- -CUGGUCGa-GCCGU--------UCGA----CCGa----CGCGu -5'
24073 5' -59.9 NC_005262.1 + 40926 0.67 0.419492
Target:  5'- uGCCGGCUCgaaguccgaGGCAAcGCUGGCgagauagccgacgaGCGCc -3'
miRNA:   3'- cUGGUCGAG---------CCGUU-CGACCGa-------------CGCGu -5'
24073 5' -59.9 NC_005262.1 + 39935 0.66 0.444009
Target:  5'- cGACCGGaCgggCGGCAccGGCaagGGCgGCGUg -3'
miRNA:   3'- -CUGGUC-Ga--GCCGU--UCGa--CCGaCGCGu -5'
24073 5' -59.9 NC_005262.1 + 53220 0.66 0.453651
Target:  5'- cGCCGcGCUgcuccgCGGUAcGCUgcGGCUGCGCGc -3'
miRNA:   3'- cUGGU-CGA------GCCGUuCGA--CCGACGCGU- -5'
24073 5' -59.9 NC_005262.1 + 8160 0.66 0.453651
Target:  5'- cGGCCacgAGCgcgCGGCccGGCUucuuGCUGCGCAg -3'
miRNA:   3'- -CUGG---UCGa--GCCGu-UCGAc---CGACGCGU- -5'
24073 5' -59.9 NC_005262.1 + 10836 0.66 0.457539
Target:  5'- -cCCGGCUCGaGCAccuugccgccggcgaAGCccaGGCgGCGCAg -3'
miRNA:   3'- cuGGUCGAGC-CGU---------------UCGa--CCGaCGCGU- -5'
24073 5' -59.9 NC_005262.1 + 40237 0.66 0.463405
Target:  5'- cGCCcGCgcgCGGCGGGCgguUGGUcagucUGCGCGg -3'
miRNA:   3'- cUGGuCGa--GCCGUUCG---ACCG-----ACGCGU- -5'
24073 5' -59.9 NC_005262.1 + 15762 0.66 0.473268
Target:  5'- uGCgGGCgCGGCcGGCU-GCUGCGUg -3'
miRNA:   3'- cUGgUCGaGCCGuUCGAcCGACGCGu -5'
24073 5' -59.9 NC_005262.1 + 46136 0.77 0.081033
Target:  5'- -uCCAGCUCGGCGcGCUGGCggGCGa- -3'
miRNA:   3'- cuGGUCGAGCCGUuCGACCGa-CGCgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.