miRNA: 3'- -CUGGUCGAG--CC-GUUCGacCGACGCGU- -5'
miRNA: 3'- cUGG-UCGAGCCGUU-CGaCCG---ACGCGu -5'
miRNA: 3'- -CUgGUCgAGCCGUUCGA----C-CGACGCGU- -5'
miRNA: 3'- cUGGUCga-GCCGU----UCGaCCG--ACGCGU- -5'
Results 61 - 64 of 64 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 24073 | 5' | -59.9 | NC_005262.1 | + | 4375 | 0.67 | 0.397604 |
|
Target: 5'- aGGCCAGCUUcaGGuCGAGC--GUUGCGCGu -3' miRNA: 3'- -CUGGUCGAG--CC-GUUCGacCGACGCGU- -5' |
|||||||
| 24073 | 5' | -59.9 | NC_005262.1 | + | 52304 | 0.67 | 0.371298 |
|
Target: 5'- aGCCgAGCUCGGCGAcGC-GGCccaUGUGCu -3' miRNA: 3'- cUGG-UCGAGCCGUU-CGaCCG---ACGCGu -5' |
|||||||
| 24073 | 5' | -59.9 | NC_005262.1 | + | 36214 | 0.67 | 0.371298 |
|
Target: 5'- cGAgCGGaUUGGCAGGCUucucGcGCUGCGCGg -3' miRNA: 3'- -CUgGUCgAGCCGUUCGA----C-CGACGCGU- -5' |
|||||||
| 24073 | 5' | -59.9 | NC_005262.1 | + | 38539 | 0.66 | 0.473268 |
|
Target: 5'- uGCCAGaggCGGCGcaggAGCcGGCguUGCGCGc -3' miRNA: 3'- cUGGUCga-GCCGU----UCGaCCG--ACGCGU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home