Results 1 - 20 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24073 | 5' | -59.9 | NC_005262.1 | + | 38539 | 0.66 | 0.473268 |
Target: 5'- uGCCAGaggCGGCGcaggAGCcGGCguUGCGCGc -3' miRNA: 3'- cUGGUCga-GCCGU----UCGaCCG--ACGCGU- -5' |
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24073 | 5' | -59.9 | NC_005262.1 | + | 52733 | 0.68 | 0.338113 |
Target: 5'- uGGCCgcucgGGCUCaGGCGAcGCUGcggccuguuGCUGCGCGc -3' miRNA: 3'- -CUGG-----UCGAG-CCGUU-CGAC---------CGACGCGU- -5' |
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24073 | 5' | -59.9 | NC_005262.1 | + | 17263 | 0.68 | 0.330162 |
Target: 5'- cGGCCGGCgcCGcGCuGGGCU-GCUGCGCGg -3' miRNA: 3'- -CUGGUCGa-GC-CG-UUCGAcCGACGCGU- -5' |
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24073 | 5' | -59.9 | NC_005262.1 | + | 46136 | 0.77 | 0.081033 |
Target: 5'- -uCCAGCUCGGCGcGCUGGCggGCGa- -3' miRNA: 3'- cuGGUCGAGCCGUuCGACCGa-CGCgu -5' |
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24073 | 5' | -59.9 | NC_005262.1 | + | 8160 | 0.66 | 0.453651 |
Target: 5'- cGGCCacgAGCgcgCGGCccGGCUucuuGCUGCGCAg -3' miRNA: 3'- -CUGG---UCGa--GCCGu-UCGAc---CGACGCGU- -5' |
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24073 | 5' | -59.9 | NC_005262.1 | + | 53220 | 0.66 | 0.453651 |
Target: 5'- cGCCGcGCUgcuccgCGGUAcGCUgcGGCUGCGCGc -3' miRNA: 3'- cUGGU-CGA------GCCGUuCGA--CCGACGCGU- -5' |
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24073 | 5' | -59.9 | NC_005262.1 | + | 40926 | 0.67 | 0.419492 |
Target: 5'- uGCCGGCUCgaaguccgaGGCAAcGCUGGCgagauagccgacgaGCGCc -3' miRNA: 3'- cUGGUCGAG---------CCGUU-CGACCGa-------------CGCGu -5' |
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24073 | 5' | -59.9 | NC_005262.1 | + | 33672 | 0.67 | 0.415793 |
Target: 5'- cGACCAGCagCGGCAcgaucgugGGCUucgcGGCggccgGCGUg -3' miRNA: 3'- -CUGGUCGa-GCCGU--------UCGA----CCGa----CGCGu -5' |
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24073 | 5' | -59.9 | NC_005262.1 | + | 4830 | 0.67 | 0.406635 |
Target: 5'- aGGCC-GCcggCGGCcGGCUGGUucgacugcUGCGCGc -3' miRNA: 3'- -CUGGuCGa--GCCGuUCGACCG--------ACGCGU- -5' |
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24073 | 5' | -59.9 | NC_005262.1 | + | 20180 | 0.68 | 0.354432 |
Target: 5'- cGCCGGUgcCGGCGAGCgucacCUGCGCGa -3' miRNA: 3'- cUGGUCGa-GCCGUUCGacc--GACGCGU- -5' |
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24073 | 5' | -59.9 | NC_005262.1 | + | 4375 | 0.67 | 0.397604 |
Target: 5'- aGGCCAGCUUcaGGuCGAGC--GUUGCGCGu -3' miRNA: 3'- -CUGGUCGAG--CC-GUUCGacCGACGCGU- -5' |
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24073 | 5' | -59.9 | NC_005262.1 | + | 60946 | 0.67 | 0.406635 |
Target: 5'- cGGCCaAGCUCGuGCGGGCacGCcagcGCGCAa -3' miRNA: 3'- -CUGG-UCGAGC-CGUUCGacCGa---CGCGU- -5' |
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24073 | 5' | -59.9 | NC_005262.1 | + | 15762 | 0.66 | 0.473268 |
Target: 5'- uGCgGGCgCGGCcGGCU-GCUGCGUg -3' miRNA: 3'- cUGgUCGaGCCGuUCGAcCGACGCGu -5' |
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24073 | 5' | -59.9 | NC_005262.1 | + | 52304 | 0.67 | 0.371298 |
Target: 5'- aGCCgAGCUCGGCGAcGC-GGCccaUGUGCu -3' miRNA: 3'- cUGG-UCGAGCCGUU-CGaCCG---ACGCGu -5' |
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24073 | 5' | -59.9 | NC_005262.1 | + | 40237 | 0.66 | 0.463405 |
Target: 5'- cGCCcGCgcgCGGCGGGCgguUGGUcagucUGCGCGg -3' miRNA: 3'- cUGGuCGa--GCCGUUCG---ACCG-----ACGCGU- -5' |
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24073 | 5' | -59.9 | NC_005262.1 | + | 42366 | 0.67 | 0.410283 |
Target: 5'- cGACCAGCUCGcggacgucggccgucGCGAGCUcGGaccagUGcCGCAa -3' miRNA: 3'- -CUGGUCGAGC---------------CGUUCGA-CCg----AC-GCGU- -5' |
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24073 | 5' | -59.9 | NC_005262.1 | + | 36214 | 0.67 | 0.371298 |
Target: 5'- cGAgCGGaUUGGCAGGCUucucGcGCUGCGCGg -3' miRNA: 3'- -CUgGUCgAGCCGUUCGA----C-CGACGCGU- -5' |
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24073 | 5' | -59.9 | NC_005262.1 | + | 41560 | 0.68 | 0.338113 |
Target: 5'- aGGCCGGC-CGGCGug--GGCgGCGCGg -3' miRNA: 3'- -CUGGUCGaGCCGUucgaCCGaCGCGU- -5' |
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24073 | 5' | -59.9 | NC_005262.1 | + | 10836 | 0.66 | 0.457539 |
Target: 5'- -cCCGGCUCGaGCAccuugccgccggcgaAGCccaGGCgGCGCAg -3' miRNA: 3'- cuGGUCGAGC-CGU---------------UCGa--CCGaCGCGU- -5' |
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24073 | 5' | -59.9 | NC_005262.1 | + | 39935 | 0.66 | 0.444009 |
Target: 5'- cGACCGGaCgggCGGCAccGGCaagGGCgGCGUg -3' miRNA: 3'- -CUGGUC-Ga--GCCGU--UCGa--CCGaCGCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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