miRNA display CGI


Results 41 - 60 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24073 5' -59.9 NC_005262.1 + 11639 0.71 0.210373
Target:  5'- cAUCGGCUCGGCGGcGCcGGCgucGCGCu -3'
miRNA:   3'- cUGGUCGAGCCGUU-CGaCCGa--CGCGu -5'
24073 5' -59.9 NC_005262.1 + 5090 0.72 0.176818
Target:  5'- cGACCGGCUCGGCGGuGCgcgcccGGUucacgaugccugccaUGCGCGa -3'
miRNA:   3'- -CUGGUCGAGCCGUU-CGa-----CCG---------------ACGCGU- -5'
24073 5' -59.9 NC_005262.1 + 62899 0.73 0.157172
Target:  5'- cGCCAGCgcgcCGaCGAGCUGGC-GCGCAa -3'
miRNA:   3'- cUGGUCGa---GCcGUUCGACCGaCGCGU- -5'
24073 5' -59.9 NC_005262.1 + 60740 0.75 0.113263
Target:  5'- cGCUGGCUCGGCGaaGGCUGGgaGaCGCGc -3'
miRNA:   3'- cUGGUCGAGCCGU--UCGACCgaC-GCGU- -5'
24073 5' -59.9 NC_005262.1 + 13981 0.69 0.292484
Target:  5'- gGGCCGGUg-GGCGAacGCUGGUUGUGUg -3'
miRNA:   3'- -CUGGUCGagCCGUU--CGACCGACGCGu -5'
24073 5' -59.9 NC_005262.1 + 20574 0.69 0.292484
Target:  5'- cGAgCAGCcCGGCGAGCaGcGCgcgGCGCGc -3'
miRNA:   3'- -CUgGUCGaGCCGUUCGaC-CGa--CGCGU- -5'
24073 5' -59.9 NC_005262.1 + 50122 0.69 0.313914
Target:  5'- cGGCCGagcGCUCGcugaccgaguggaGCGAGcCUGaGCUGCGCGa -3'
miRNA:   3'- -CUGGU---CGAGC-------------CGUUC-GAC-CGACGCGU- -5'
24073 5' -59.9 NC_005262.1 + 43393 0.66 0.434483
Target:  5'- uGCgAGCaucggCGGCGAGCUcaacGGCgcgGCGCu -3'
miRNA:   3'- cUGgUCGa----GCCGUUCGA----CCGa--CGCGu -5'
24073 5' -59.9 NC_005262.1 + 13561 0.66 0.424143
Target:  5'- cGACCGuuGCUUGGCAuccgcucGGCUGGaagccgGCGUg -3'
miRNA:   3'- -CUGGU--CGAGCCGU-------UCGACCga----CGCGu -5'
24073 5' -59.9 NC_005262.1 + 24899 0.67 0.419492
Target:  5'- aGGCgAGCUCGGcCAgccggaggacgccgaGGCaUGGCgggaUGCGCAc -3'
miRNA:   3'- -CUGgUCGAGCC-GU---------------UCG-ACCG----ACGCGU- -5'
24073 5' -59.9 NC_005262.1 + 57269 0.67 0.415793
Target:  5'- aACCAGCUCGcGC-AGCUcacGGCccgcGUGCAg -3'
miRNA:   3'- cUGGUCGAGC-CGuUCGA---CCGa---CGCGU- -5'
24073 5' -59.9 NC_005262.1 + 60670 0.67 0.379934
Target:  5'- cAUCGcGCUCGGCAuGCUGGC-GaCGCu -3'
miRNA:   3'- cUGGU-CGAGCCGUuCGACCGaC-GCGu -5'
24073 5' -59.9 NC_005262.1 + 11992 0.67 0.374736
Target:  5'- cGACCAGCUaCGGCGuggacacguuugcacGGCgcaaucUGGUcGCGCGc -3'
miRNA:   3'- -CUGGUCGA-GCCGU---------------UCG------ACCGaCGCGU- -5'
24073 5' -59.9 NC_005262.1 + 57045 0.67 0.379934
Target:  5'- aGCUGGC-CGGCAAGgaGGCUGauaccgccgaGCAg -3'
miRNA:   3'- cUGGUCGaGCCGUUCgaCCGACg---------CGU- -5'
24073 5' -59.9 NC_005262.1 + 63021 0.67 0.371298
Target:  5'- cGGCCAGUacggcaUCGGCAA-CUGGCgcaaguccagcaUGCGCc -3'
miRNA:   3'- -CUGGUCG------AGCCGUUcGACCG------------ACGCGu -5'
24073 5' -59.9 NC_005262.1 + 5177 0.67 0.371298
Target:  5'- cGGCCGGCgUC-GCGGGCgcgGGCgcggccgGCGCGa -3'
miRNA:   3'- -CUGGUCG-AGcCGUUCGa--CCGa------CGCGU- -5'
24073 5' -59.9 NC_005262.1 + 51250 0.68 0.354432
Target:  5'- cGCCGGCUacgguaaggaCGGCAAGCUgaaccucaccGGCcgccggcugcUGCGCAu -3'
miRNA:   3'- cUGGUCGA----------GCCGUUCGA----------CCG----------ACGCGU- -5'
24073 5' -59.9 NC_005262.1 + 45366 0.68 0.346204
Target:  5'- aACCAGCaauacagcaccUCGGguAGCaucugGGCgGCGCAg -3'
miRNA:   3'- cUGGUCG-----------AGCCguUCGa----CCGaCGCGU- -5'
24073 5' -59.9 NC_005262.1 + 58627 0.68 0.338113
Target:  5'- cACCgucaGGCUCGGCAgucgAGCggccgGGC-GCGCGa -3'
miRNA:   3'- cUGG----UCGAGCCGU----UCGa----CCGaCGCGU- -5'
24073 5' -59.9 NC_005262.1 + 24978 0.68 0.322348
Target:  5'- aGGCCGGCUUGGUcgAGGC-GGCauucgaGCGCGg -3'
miRNA:   3'- -CUGGUCGAGCCG--UUCGaCCGa-----CGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.