miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24074 3' -58.6 NC_005262.1 + 41534 0.66 0.61585
Target:  5'- gGACGUauggCGAcGGCGUGaugcgcaggccgGCCGGCGUGg -3'
miRNA:   3'- gCUGCG----GCUcCCGUAC------------UGGUCGCACg -5'
24074 3' -58.6 NC_005262.1 + 5440 0.66 0.61585
Target:  5'- uCGAUGucCCGGcGcGGCAUGACCucGCG-GCg -3'
miRNA:   3'- -GCUGC--GGCU-C-CCGUACUGGu-CGCaCG- -5'
24074 3' -58.6 NC_005262.1 + 45696 0.66 0.61585
Target:  5'- -uGCGCauCGAGGGCcgGcaGCCGGcCGUGa -3'
miRNA:   3'- gcUGCG--GCUCCCGuaC--UGGUC-GCACg -5'
24074 3' -58.6 NC_005262.1 + 60498 0.66 0.61585
Target:  5'- aGACGCCGGGccgcgcGGCGcaGGCCgccaagAGCGUGa -3'
miRNA:   3'- gCUGCGGCUC------CCGUa-CUGG------UCGCACg -5'
24074 3' -58.6 NC_005262.1 + 22657 0.66 0.61585
Target:  5'- aGAgGCgGAauggcuucaGGGCGcgGACCAGUGcGCa -3'
miRNA:   3'- gCUgCGgCU---------CCCGUa-CUGGUCGCaCG- -5'
24074 3' -58.6 NC_005262.1 + 22888 0.66 0.60526
Target:  5'- uGACGgCGAGGGCGuaguacggUGGUCGGUucucguGUGCg -3'
miRNA:   3'- gCUGCgGCUCCCGU--------ACUGGUCG------CACG- -5'
24074 3' -58.6 NC_005262.1 + 46627 0.66 0.60526
Target:  5'- cCGACGCgaUGaAGGGCAcgcugaUGGCCgacAGCG-GCa -3'
miRNA:   3'- -GCUGCG--GC-UCCCGU------ACUGG---UCGCaCG- -5'
24074 3' -58.6 NC_005262.1 + 5346 0.66 0.602086
Target:  5'- uGACGCCGcgcacgccugccGGGGCGUccuugacgggcaggGACgCGGcCGUGUc -3'
miRNA:   3'- gCUGCGGC------------UCCCGUA--------------CUG-GUC-GCACG- -5'
24074 3' -58.6 NC_005262.1 + 12664 0.66 0.573648
Target:  5'- aCGGCGUCGAGcGCcuugucGACCGGCGcGUc -3'
miRNA:   3'- -GCUGCGGCUCcCGua----CUGGUCGCaCG- -5'
24074 3' -58.6 NC_005262.1 + 30038 0.66 0.573648
Target:  5'- aCGACGCagcaGcGGGCAaGACCGaCGaUGCu -3'
miRNA:   3'- -GCUGCGg---CuCCCGUaCUGGUcGC-ACG- -5'
24074 3' -58.6 NC_005262.1 + 18109 0.66 0.573648
Target:  5'- cCGGCGUCGAcaauugggaGGGUAUcGACgaAGCGcUGCg -3'
miRNA:   3'- -GCUGCGGCU---------CCCGUA-CUGg-UCGC-ACG- -5'
24074 3' -58.6 NC_005262.1 + 454 0.66 0.563191
Target:  5'- uGAucCGCCuuGAGGGCGUuGACCucGGCGacgcgGCg -3'
miRNA:   3'- gCU--GCGG--CUCCCGUA-CUGG--UCGCa----CG- -5'
24074 3' -58.6 NC_005262.1 + 49712 0.66 0.563191
Target:  5'- aCGGCguGCCGGGcGGCGa-ACCGGCG-GCc -3'
miRNA:   3'- -GCUG--CGGCUC-CCGUacUGGUCGCaCG- -5'
24074 3' -58.6 NC_005262.1 + 50055 0.66 0.563191
Target:  5'- gCGAgGCUGAauGCcUGGCaCGGCGUGCc -3'
miRNA:   3'- -GCUgCGGCUccCGuACUG-GUCGCACG- -5'
24074 3' -58.6 NC_005262.1 + 28544 0.66 0.563191
Target:  5'- cCGuuCGCCGGGGGCGc--CCAGCcgcUGCc -3'
miRNA:   3'- -GCu-GCGGCUCCCGUacuGGUCGc--ACG- -5'
24074 3' -58.6 NC_005262.1 + 59312 0.67 0.552784
Target:  5'- gGACGgCGGcucGGGCAUGACgaCGGCugaUGCg -3'
miRNA:   3'- gCUGCgGCU---CCCGUACUG--GUCGc--ACG- -5'
24074 3' -58.6 NC_005262.1 + 59124 0.67 0.551747
Target:  5'- -cGCGCCGAGgcgaaccGGCcgGGCC-GCGUcGCc -3'
miRNA:   3'- gcUGCGGCUC-------CCGuaCUGGuCGCA-CG- -5'
24074 3' -58.6 NC_005262.1 + 38558 0.67 0.546568
Target:  5'- uCGGCaccGCCGcGGGCcgGAUgaaagaagcaugcuuUGGCGUGCg -3'
miRNA:   3'- -GCUG---CGGCuCCCGuaCUG---------------GUCGCACG- -5'
24074 3' -58.6 NC_005262.1 + 47287 0.67 0.532153
Target:  5'- gGACGCCGc-GGCGaaGAUCGGCGagGCa -3'
miRNA:   3'- gCUGCGGCucCCGUa-CUGGUCGCa-CG- -5'
24074 3' -58.6 NC_005262.1 + 505 0.67 0.532153
Target:  5'- uCGACGCCGAGccaGCAgccGGCCgucaagcaGGCG-GCg -3'
miRNA:   3'- -GCUGCGGCUCc--CGUa--CUGG--------UCGCaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.