miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24074 3' -58.6 NC_005262.1 + 59124 0.67 0.551747
Target:  5'- -cGCGCCGAGgcgaaccGGCcgGGCC-GCGUcGCc -3'
miRNA:   3'- gcUGCGGCUC-------CCGuaCUGGuCGCA-CG- -5'
24074 3' -58.6 NC_005262.1 + 59312 0.67 0.552784
Target:  5'- gGACGgCGGcucGGGCAUGACgaCGGCugaUGCg -3'
miRNA:   3'- gCUGCgGCU---CCCGUACUG--GUCGc--ACG- -5'
24074 3' -58.6 NC_005262.1 + 47287 0.67 0.532153
Target:  5'- gGACGCCGc-GGCGaaGAUCGGCGagGCa -3'
miRNA:   3'- gCUGCGGCucCCGUa-CUGGUCGCa-CG- -5'
24074 3' -58.6 NC_005262.1 + 34005 0.67 0.500753
Target:  5'- gGGCGCgGAcGGCGUGacGCCGGgccgcauCGUGCg -3'
miRNA:   3'- gCUGCGgCUcCCGUAC--UGGUC-------GCACG- -5'
24074 3' -58.6 NC_005262.1 + 54642 0.67 0.521941
Target:  5'- aGGCGCCGGGugauccGCAUuccGACCGGCccgGCg -3'
miRNA:   3'- gCUGCGGCUCc-----CGUA---CUGGUCGca-CG- -5'
24074 3' -58.6 NC_005262.1 + 505 0.67 0.532153
Target:  5'- uCGACGCCGAGccaGCAgccGGCCgucaagcaGGCG-GCg -3'
miRNA:   3'- -GCUGCGGCUCc--CGUa--CUGG--------UCGCaCG- -5'
24074 3' -58.6 NC_005262.1 + 63576 0.67 0.521941
Target:  5'- uGACGCCGuacGGCAUGcuCguGCGcGCg -3'
miRNA:   3'- gCUGCGGCuc-CCGUACu-GguCGCaCG- -5'
24074 3' -58.6 NC_005262.1 + 24731 0.67 0.501754
Target:  5'- -cGCGCUGGcGcGCGcGAUCGGCGUGCg -3'
miRNA:   3'- gcUGCGGCUcC-CGUaCUGGUCGCACG- -5'
24074 3' -58.6 NC_005262.1 + 15719 0.68 0.491789
Target:  5'- uCGGCGCCGGGcGGCucguCgCGGCagGUGCg -3'
miRNA:   3'- -GCUGCGGCUC-CCGuacuG-GUCG--CACG- -5'
24074 3' -58.6 NC_005262.1 + 11696 0.68 0.491789
Target:  5'- gCGuCGCCGAGGucguccguCAUGGCCuuGGCGUauGCg -3'
miRNA:   3'- -GCuGCGGCUCCc-------GUACUGG--UCGCA--CG- -5'
24074 3' -58.6 NC_005262.1 + 23810 0.68 0.488817
Target:  5'- gCGAUGUgCGAGGGguUGgucaucucaugggcGCCGGCGaGCg -3'
miRNA:   3'- -GCUGCG-GCUCCCguAC--------------UGGUCGCaCG- -5'
24074 3' -58.6 NC_005262.1 + 60117 0.68 0.452896
Target:  5'- uCGG-GCaCGAGGGC---GCCAGCGUcGCg -3'
miRNA:   3'- -GCUgCG-GCUCCCGuacUGGUCGCA-CG- -5'
24074 3' -58.6 NC_005262.1 + 14582 0.68 0.481916
Target:  5'- gCGcCGCCGAGGccGCccucGGCCAGCaUGCc -3'
miRNA:   3'- -GCuGCGGCUCC--CGua--CUGGUCGcACG- -5'
24074 3' -58.6 NC_005262.1 + 38509 0.68 0.491789
Target:  5'- uGGCucuCCGGGGGCAcGGCCGGCa--- -3'
miRNA:   3'- gCUGc--GGCUCCCGUaCUGGUCGcacg -5'
24074 3' -58.6 NC_005262.1 + 52942 0.68 0.443436
Target:  5'- -uGCGCCGccuGGGCuucGCCGGCG-GCa -3'
miRNA:   3'- gcUGCGGCu--CCCGuacUGGUCGCaCG- -5'
24074 3' -58.6 NC_005262.1 + 49205 0.68 0.443436
Target:  5'- cCGGCaugcugGCCGAGGGCGgccUCGGCG-GCg -3'
miRNA:   3'- -GCUG------CGGCUCCCGUacuGGUCGCaCG- -5'
24074 3' -58.6 NC_005262.1 + 50415 0.68 0.443436
Target:  5'- -aGCGCCGcGGaGCGcgagGGCC-GCGUGCa -3'
miRNA:   3'- gcUGCGGCuCC-CGUa---CUGGuCGCACG- -5'
24074 3' -58.6 NC_005262.1 + 44966 0.68 0.462465
Target:  5'- uGGcCGCCGAGGcGag-GGCCGaCGUGCa -3'
miRNA:   3'- gCU-GCGGCUCC-CguaCUGGUcGCACG- -5'
24074 3' -58.6 NC_005262.1 + 771 0.68 0.481916
Target:  5'- uCGuCGCCGAgguucGGGCGuggcuUGACCGGCa-GCa -3'
miRNA:   3'- -GCuGCGGCU-----CCCGU-----ACUGGUCGcaCG- -5'
24074 3' -58.6 NC_005262.1 + 17233 0.68 0.462465
Target:  5'- uCGugGUCGucguGGGCGUcgcgggagcggcGGCCGGCGccGCg -3'
miRNA:   3'- -GCugCGGCu---CCCGUA------------CUGGUCGCa-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.