miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24074 3' -58.6 NC_005262.1 + 13979 0.7 0.350557
Target:  5'- gGGgGCCGGuGGGCGaacgcUGGuuguguguauggaccCCAGCGUGCa -3'
miRNA:   3'- gCUgCGGCU-CCCGU-----ACU---------------GGUCGCACG- -5'
24074 3' -58.6 NC_005262.1 + 13768 0.7 0.380511
Target:  5'- cCGGCGCCGGcucGGGCuucacuucgGUGggcGCCGGCGcgGCu -3'
miRNA:   3'- -GCUGCGGCU---CCCG---------UAC---UGGUCGCa-CG- -5'
24074 3' -58.6 NC_005262.1 + 17112 0.69 0.41574
Target:  5'- gCGGCGCUGAcugcaucggcGGGCGUcgguGCCGGCGccaUGCu -3'
miRNA:   3'- -GCUGCGGCU----------CCCGUAc---UGGUCGC---ACG- -5'
24074 3' -58.6 NC_005262.1 + 39603 0.69 0.434087
Target:  5'- gCGGCuGCCGccucGGGCGUGaacucGCCggggaacgugcaGGCGUGCg -3'
miRNA:   3'- -GCUG-CGGCu---CCCGUAC-----UGG------------UCGCACG- -5'
24074 3' -58.6 NC_005262.1 + 16043 0.69 0.41574
Target:  5'- gCGAUGCCGGGuucGCcgcGGCCGGCG-GCg -3'
miRNA:   3'- -GCUGCGGCUCc--CGua-CUGGUCGCaCG- -5'
24074 3' -58.6 NC_005262.1 + 5048 0.69 0.406746
Target:  5'- cCGGCGCCuGAucggcGGGCA-GGCCcGCGgcgGCg -3'
miRNA:   3'- -GCUGCGG-CU-----CCCGUaCUGGuCGCa--CG- -5'
24074 3' -58.6 NC_005262.1 + 30900 0.69 0.41574
Target:  5'- gCGACGCCGccGGCuUGGCCGacguucgacGCG-GCg -3'
miRNA:   3'- -GCUGCGGCucCCGuACUGGU---------CGCaCG- -5'
24074 3' -58.6 NC_005262.1 + 17318 0.69 0.434087
Target:  5'- -cAUGUCGAcGGGCugcgucGUGGCCGGCGcgGCa -3'
miRNA:   3'- gcUGCGGCU-CCCG------UACUGGUCGCa-CG- -5'
24074 3' -58.6 NC_005262.1 + 57481 0.69 0.41574
Target:  5'- gGGCGCCGAcgaGaGGC--GGCCGGCGaGCg -3'
miRNA:   3'- gCUGCGGCU---C-CCGuaCUGGUCGCaCG- -5'
24074 3' -58.6 NC_005262.1 + 41167 0.69 0.424854
Target:  5'- -cGCGCagGAGGGCAccGCCGcgaucGCGUGCg -3'
miRNA:   3'- gcUGCGg-CUCCCGUacUGGU-----CGCACG- -5'
24074 3' -58.6 NC_005262.1 + 11696 0.68 0.491789
Target:  5'- gCGuCGCCGAGGucguccguCAUGGCCuuGGCGUauGCg -3'
miRNA:   3'- -GCuGCGGCUCCc-------GUACUGG--UCGCA--CG- -5'
24074 3' -58.6 NC_005262.1 + 15719 0.68 0.491789
Target:  5'- uCGGCGCCGGGcGGCucguCgCGGCagGUGCg -3'
miRNA:   3'- -GCUGCGGCUC-CCGuacuG-GUCG--CACG- -5'
24074 3' -58.6 NC_005262.1 + 15752 0.68 0.443436
Target:  5'- cCGACGCgcuUGcGGGCGcGGCCGGC-UGCu -3'
miRNA:   3'- -GCUGCG---GCuCCCGUaCUGGUCGcACG- -5'
24074 3' -58.6 NC_005262.1 + 52942 0.68 0.443436
Target:  5'- -uGCGCCGccuGGGCuucGCCGGCG-GCa -3'
miRNA:   3'- gcUGCGGCu--CCCGuacUGGUCGCaCG- -5'
24074 3' -58.6 NC_005262.1 + 50415 0.68 0.443436
Target:  5'- -aGCGCCGcGGaGCGcgagGGCC-GCGUGCa -3'
miRNA:   3'- gcUGCGGCuCC-CGUa---CUGGuCGCACG- -5'
24074 3' -58.6 NC_005262.1 + 3237 0.68 0.462465
Target:  5'- -cGCGCCGAGcGCcgGcguCAGCGUGCc -3'
miRNA:   3'- gcUGCGGCUCcCGuaCug-GUCGCACG- -5'
24074 3' -58.6 NC_005262.1 + 17233 0.68 0.462465
Target:  5'- uCGugGUCGucguGGGCGUcgcgggagcggcGGCCGGCGccGCg -3'
miRNA:   3'- -GCugCGGCu---CCCGUA------------CUGGUCGCa-CG- -5'
24074 3' -58.6 NC_005262.1 + 44966 0.68 0.462465
Target:  5'- uGGcCGCCGAGGcGag-GGCCGaCGUGCa -3'
miRNA:   3'- gCU-GCGGCUCC-CguaCUGGUcGCACG- -5'
24074 3' -58.6 NC_005262.1 + 771 0.68 0.481916
Target:  5'- uCGuCGCCGAgguucGGGCGuggcuUGACCGGCa-GCa -3'
miRNA:   3'- -GCuGCGGCU-----CCCGU-----ACUGGUCGcaCG- -5'
24074 3' -58.6 NC_005262.1 + 38509 0.68 0.491789
Target:  5'- uGGCucuCCGGGGGCAcGGCCGGCa--- -3'
miRNA:   3'- gCUGc--GGCUCCCGUaCUGGUCGcacg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.