miRNA display CGI


Results 41 - 60 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24074 3' -58.6 NC_005262.1 + 50415 0.68 0.443436
Target:  5'- -aGCGCCGcGGaGCGcgagGGCC-GCGUGCa -3'
miRNA:   3'- gcUGCGGCuCC-CGUa---CUGGuCGCACG- -5'
24074 3' -58.6 NC_005262.1 + 38509 0.68 0.491789
Target:  5'- uGGCucuCCGGGGGCAcGGCCGGCa--- -3'
miRNA:   3'- gCUGc--GGCUCCCGUaCUGGUCGcacg -5'
24074 3' -58.6 NC_005262.1 + 60117 0.68 0.452896
Target:  5'- uCGG-GCaCGAGGGC---GCCAGCGUcGCg -3'
miRNA:   3'- -GCUgCG-GCUCCCGuacUGGUCGCA-CG- -5'
24074 3' -58.6 NC_005262.1 + 771 0.68 0.481916
Target:  5'- uCGuCGCCGAgguucGGGCGuggcuUGACCGGCa-GCa -3'
miRNA:   3'- -GCuGCGGCU-----CCCGU-----ACUGGUCGcaCG- -5'
24074 3' -58.6 NC_005262.1 + 54642 0.67 0.521941
Target:  5'- aGGCGCCGGGugauccGCAUuccGACCGGCccgGCg -3'
miRNA:   3'- gCUGCGGCUCc-----CGUA---CUGGUCGca-CG- -5'
24074 3' -58.6 NC_005262.1 + 24731 0.67 0.501754
Target:  5'- -cGCGCUGGcGcGCGcGAUCGGCGUGCg -3'
miRNA:   3'- gcUGCGGCUcC-CGUaCUGGUCGCACG- -5'
24074 3' -58.6 NC_005262.1 + 34005 0.67 0.500753
Target:  5'- gGGCGCgGAcGGCGUGacGCCGGgccgcauCGUGCg -3'
miRNA:   3'- gCUGCGgCUcCCGUAC--UGGUC-------GCACG- -5'
24074 3' -58.6 NC_005262.1 + 47287 0.67 0.532153
Target:  5'- gGACGCCGc-GGCGaaGAUCGGCGagGCa -3'
miRNA:   3'- gCUGCGGCucCCGUa-CUGGUCGCa-CG- -5'
24074 3' -58.6 NC_005262.1 + 63576 0.67 0.521941
Target:  5'- uGACGCCGuacGGCAUGcuCguGCGcGCg -3'
miRNA:   3'- gCUGCGGCuc-CCGUACu-GguCGCaCG- -5'
24074 3' -58.6 NC_005262.1 + 505 0.67 0.532153
Target:  5'- uCGACGCCGAGccaGCAgccGGCCgucaagcaGGCG-GCg -3'
miRNA:   3'- -GCUGCGGCUCc--CGUa--CUGG--------UCGCaCG- -5'
24074 3' -58.6 NC_005262.1 + 2021 0.67 0.515851
Target:  5'- aCGGCGCugcuucgugcugcuCGAcgGGGCGcGuagcgagcaucccaGCCAGCGUGCg -3'
miRNA:   3'- -GCUGCG--------------GCU--CCCGUaC--------------UGGUCGCACG- -5'
24074 3' -58.6 NC_005262.1 + 59312 0.67 0.552784
Target:  5'- gGACGgCGGcucGGGCAUGACgaCGGCugaUGCg -3'
miRNA:   3'- gCUGCgGCU---CCCGUACUG--GUCGc--ACG- -5'
24074 3' -58.6 NC_005262.1 + 15387 0.67 0.511806
Target:  5'- --uCGCCGGGGGUuUGACUgauGCGcGCu -3'
miRNA:   3'- gcuGCGGCUCCCGuACUGGu--CGCaCG- -5'
24074 3' -58.6 NC_005262.1 + 59124 0.67 0.551747
Target:  5'- -cGCGCCGAGgcgaaccGGCcgGGCC-GCGUcGCc -3'
miRNA:   3'- gcUGCGGCUC-------CCGuaCUGGuCGCA-CG- -5'
24074 3' -58.6 NC_005262.1 + 49513 0.67 0.511806
Target:  5'- gCGAuCGCCGAGGGCcUGcucgaggagcuGCCgcagAGCGcGCu -3'
miRNA:   3'- -GCU-GCGGCUCCCGuAC-----------UGG----UCGCaCG- -5'
24074 3' -58.6 NC_005262.1 + 38558 0.67 0.546568
Target:  5'- uCGGCaccGCCGcGGGCcgGAUgaaagaagcaugcuuUGGCGUGCg -3'
miRNA:   3'- -GCUG---CGGCuCCCGuaCUG---------------GUCGCACG- -5'
24074 3' -58.6 NC_005262.1 + 5180 0.67 0.521941
Target:  5'- cCGGCGUCGcGGGCGcgggcgcGGCCGGCGcgaccgaggGCg -3'
miRNA:   3'- -GCUGCGGCuCCCGUa------CUGGUCGCa--------CG- -5'
24074 3' -58.6 NC_005262.1 + 454 0.66 0.563191
Target:  5'- uGAucCGCCuuGAGGGCGUuGACCucGGCGacgcgGCg -3'
miRNA:   3'- gCU--GCGG--CUCCCGUA-CUGG--UCGCa----CG- -5'
24074 3' -58.6 NC_005262.1 + 12664 0.66 0.573648
Target:  5'- aCGGCGUCGAGcGCcuugucGACCGGCGcGUc -3'
miRNA:   3'- -GCUGCGGCUCcCGua----CUGGUCGCaCG- -5'
24074 3' -58.6 NC_005262.1 + 28544 0.66 0.563191
Target:  5'- cCGuuCGCCGGGGGCGc--CCAGCcgcUGCc -3'
miRNA:   3'- -GCu-GCGGCUCCCGUacuGGUCGc--ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.