Results 1 - 20 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24074 | 3' | -58.6 | NC_005262.1 | + | 52178 | 1.12 | 0.000397 |
Target: 5'- uCGACGCCGAGGGCAUGACCAGCGUGCa -3' miRNA: 3'- -GCUGCGGCUCCCGUACUGGUCGCACG- -5' |
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24074 | 3' | -58.6 | NC_005262.1 | + | 22705 | 0.8 | 0.08137 |
Target: 5'- aCGugGCCGGcGGCGuUGACgAGCGUGCc -3' miRNA: 3'- -GCugCGGCUcCCGU-ACUGgUCGCACG- -5' |
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24074 | 3' | -58.6 | NC_005262.1 | + | 57918 | 0.8 | 0.08694 |
Target: 5'- uCGACGUCGAucgcuucauccgcacGGuGC-UGACCAGCGUGCa -3' miRNA: 3'- -GCUGCGGCU---------------CC-CGuACUGGUCGCACG- -5' |
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24074 | 3' | -58.6 | NC_005262.1 | + | 57750 | 0.75 | 0.168805 |
Target: 5'- aGGCGCuCGAGGGCAUuGCgCgcaauGGCGUGCu -3' miRNA: 3'- gCUGCG-GCUCCCGUAcUG-G-----UCGCACG- -5' |
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24074 | 3' | -58.6 | NC_005262.1 | + | 2661 | 0.74 | 0.197333 |
Target: 5'- gCGGCGCCGGGcGGCGuccUGGCCGcCGUaGCa -3' miRNA: 3'- -GCUGCGGCUC-CCGU---ACUGGUcGCA-CG- -5' |
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24074 | 3' | -58.6 | NC_005262.1 | + | 24920 | 0.74 | 0.218619 |
Target: 5'- gGACGCCGA-GGCAUGGCgGGa-UGCg -3' miRNA: 3'- gCUGCGGCUcCCGUACUGgUCgcACG- -5' |
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24074 | 3' | -58.6 | NC_005262.1 | + | 25 | 0.73 | 0.254195 |
Target: 5'- gCGGCGUCGAuGGCAUGcuCCAGUGccUGCa -3' miRNA: 3'- -GCUGCGGCUcCCGUACu-GGUCGC--ACG- -5' |
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24074 | 3' | -58.6 | NC_005262.1 | + | 48431 | 0.72 | 0.260568 |
Target: 5'- aCGACGgaCGGcGGCAUGACCAcGCGcGCg -3' miRNA: 3'- -GCUGCg-GCUcCCGUACUGGU-CGCaCG- -5' |
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24074 | 3' | -58.6 | NC_005262.1 | + | 29150 | 0.72 | 0.260568 |
Target: 5'- aCGAgGCCGAGuGGCGcgcGACCAuGCGUcagGCg -3' miRNA: 3'- -GCUgCGGCUC-CCGUa--CUGGU-CGCA---CG- -5' |
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24074 | 3' | -58.6 | NC_005262.1 | + | 56425 | 0.72 | 0.26707 |
Target: 5'- cCGACauGCgCGAGGGCAaaaagcgcgugcUGAUCGGCG-GCa -3' miRNA: 3'- -GCUG--CG-GCUCCCGU------------ACUGGUCGCaCG- -5' |
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24074 | 3' | -58.6 | NC_005262.1 | + | 45767 | 0.72 | 0.273702 |
Target: 5'- gCGACGCCGAucGGCAUcgcggcgaagGGCggCGGCGUGCu -3' miRNA: 3'- -GCUGCGGCUc-CCGUA----------CUG--GUCGCACG- -5' |
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24074 | 3' | -58.6 | NC_005262.1 | + | 50800 | 0.72 | 0.280466 |
Target: 5'- aGGuCGCCGAGGGCAUGG--AGCGcuucGCg -3' miRNA: 3'- gCU-GCGGCUCCCGUACUggUCGCa---CG- -5' |
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24074 | 3' | -58.6 | NC_005262.1 | + | 58814 | 0.72 | 0.287362 |
Target: 5'- uCGGCGCCGugaaGGCAUGGCUgcuGCG-GCg -3' miRNA: 3'- -GCUGCGGCuc--CCGUACUGGu--CGCaCG- -5' |
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24074 | 3' | -58.6 | NC_005262.1 | + | 49322 | 0.71 | 0.301553 |
Target: 5'- aGGCGC--AGGGCAUGACCgacgagcaGGCGcGCg -3' miRNA: 3'- gCUGCGgcUCCCGUACUGG--------UCGCaCG- -5' |
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24074 | 3' | -58.6 | NC_005262.1 | + | 35217 | 0.71 | 0.301553 |
Target: 5'- -cACGCCGuAGGGCAUG-CCGucGCGcGCg -3' miRNA: 3'- gcUGCGGC-UCCCGUACuGGU--CGCaCG- -5' |
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24074 | 3' | -58.6 | NC_005262.1 | + | 30995 | 0.71 | 0.301553 |
Target: 5'- cCGACGUCGAacGCgAUGGCCGGCGcGCc -3' miRNA: 3'- -GCUGCGGCUccCG-UACUGGUCGCaCG- -5' |
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24074 | 3' | -58.6 | NC_005262.1 | + | 26333 | 0.71 | 0.323841 |
Target: 5'- aGAUGCuCGAGGaGCugAUGcCgGGCGUGCg -3' miRNA: 3'- gCUGCG-GCUCC-CG--UACuGgUCGCACG- -5' |
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24074 | 3' | -58.6 | NC_005262.1 | + | 51380 | 0.7 | 0.33937 |
Target: 5'- gCGACGCCGgccaAGGccGCGccUGACC-GUGUGCa -3' miRNA: 3'- -GCUGCGGC----UCC--CGU--ACUGGuCGCACG- -5' |
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24074 | 3' | -58.6 | NC_005262.1 | + | 4813 | 0.7 | 0.33937 |
Target: 5'- aCGGCGCgGGaGGCGUGaggccGCCGGCGgccgGCu -3' miRNA: 3'- -GCUGCGgCUcCCGUAC-----UGGUCGCa---CG- -5' |
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24074 | 3' | -58.6 | NC_005262.1 | + | 13979 | 0.7 | 0.350557 |
Target: 5'- gGGgGCCGGuGGGCGaacgcUGGuuguguguauggaccCCAGCGUGCa -3' miRNA: 3'- gCUgCGGCU-CCCGU-----ACU---------------GGUCGCACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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