miRNA display CGI


Results 41 - 60 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24074 3' -58.6 NC_005262.1 + 15752 0.68 0.443436
Target:  5'- cCGACGCgcuUGcGGGCGcGGCCGGC-UGCu -3'
miRNA:   3'- -GCUGCG---GCuCCCGUaCUGGUCGcACG- -5'
24074 3' -58.6 NC_005262.1 + 52942 0.68 0.443436
Target:  5'- -uGCGCCGccuGGGCuucGCCGGCG-GCa -3'
miRNA:   3'- gcUGCGGCu--CCCGuacUGGUCGCaCG- -5'
24074 3' -58.6 NC_005262.1 + 39603 0.69 0.434087
Target:  5'- gCGGCuGCCGccucGGGCGUGaacucGCCggggaacgugcaGGCGUGCg -3'
miRNA:   3'- -GCUG-CGGCu---CCCGUAC-----UGG------------UCGCACG- -5'
24074 3' -58.6 NC_005262.1 + 17318 0.69 0.434087
Target:  5'- -cAUGUCGAcGGGCugcgucGUGGCCGGCGcgGCa -3'
miRNA:   3'- gcUGCGGCU-CCCG------UACUGGUCGCa-CG- -5'
24074 3' -58.6 NC_005262.1 + 41167 0.69 0.424854
Target:  5'- -cGCGCagGAGGGCAccGCCGcgaucGCGUGCg -3'
miRNA:   3'- gcUGCGg-CUCCCGUacUGGU-----CGCACG- -5'
24074 3' -58.6 NC_005262.1 + 57481 0.69 0.41574
Target:  5'- gGGCGCCGAcgaGaGGC--GGCCGGCGaGCg -3'
miRNA:   3'- gCUGCGGCU---C-CCGuaCUGGUCGCaCG- -5'
24074 3' -58.6 NC_005262.1 + 17112 0.69 0.41574
Target:  5'- gCGGCGCUGAcugcaucggcGGGCGUcgguGCCGGCGccaUGCu -3'
miRNA:   3'- -GCUGCGGCU----------CCCGUAc---UGGUCGC---ACG- -5'
24074 3' -58.6 NC_005262.1 + 16043 0.69 0.41574
Target:  5'- gCGAUGCCGGGuucGCcgcGGCCGGCG-GCg -3'
miRNA:   3'- -GCUGCGGCUCc--CGua-CUGGUCGCaCG- -5'
24074 3' -58.6 NC_005262.1 + 30900 0.69 0.41574
Target:  5'- gCGACGCCGccGGCuUGGCCGacguucgacGCG-GCg -3'
miRNA:   3'- -GCUGCGGCucCCGuACUGGU---------CGCaCG- -5'
24074 3' -58.6 NC_005262.1 + 5048 0.69 0.406746
Target:  5'- cCGGCGCCuGAucggcGGGCA-GGCCcGCGgcgGCg -3'
miRNA:   3'- -GCUGCGG-CU-----CCCGUaCUGGuCGCa--CG- -5'
24074 3' -58.6 NC_005262.1 + 13768 0.7 0.380511
Target:  5'- cCGGCGCCGGcucGGGCuucacuucgGUGggcGCCGGCGcgGCu -3'
miRNA:   3'- -GCUGCGGCU---CCCG---------UAC---UGGUCGCa-CG- -5'
24074 3' -58.6 NC_005262.1 + 5090 0.7 0.355431
Target:  5'- -aGCGCCucGGGCAUGccGCCAGCuuguUGCg -3'
miRNA:   3'- gcUGCGGcuCCCGUAC--UGGUCGc---ACG- -5'
24074 3' -58.6 NC_005262.1 + 13979 0.7 0.350557
Target:  5'- gGGgGCCGGuGGGCGaacgcUGGuuguguguauggaccCCAGCGUGCa -3'
miRNA:   3'- gCUgCGGCU-CCCGU-----ACU---------------GGUCGCACG- -5'
24074 3' -58.6 NC_005262.1 + 51380 0.7 0.33937
Target:  5'- gCGACGCCGgccaAGGccGCGccUGACC-GUGUGCa -3'
miRNA:   3'- -GCUGCGGC----UCC--CGU--ACUGGuCGCACG- -5'
24074 3' -58.6 NC_005262.1 + 4813 0.7 0.33937
Target:  5'- aCGGCGCgGGaGGCGUGaggccGCCGGCGgccgGCu -3'
miRNA:   3'- -GCUGCGgCUcCCGUAC-----UGGUCGCa---CG- -5'
24074 3' -58.6 NC_005262.1 + 26333 0.71 0.323841
Target:  5'- aGAUGCuCGAGGaGCugAUGcCgGGCGUGCg -3'
miRNA:   3'- gCUGCG-GCUCC-CG--UACuGgUCGCACG- -5'
24074 3' -58.6 NC_005262.1 + 49322 0.71 0.301553
Target:  5'- aGGCGC--AGGGCAUGACCgacgagcaGGCGcGCg -3'
miRNA:   3'- gCUGCGgcUCCCGUACUGG--------UCGCaCG- -5'
24074 3' -58.6 NC_005262.1 + 35217 0.71 0.301553
Target:  5'- -cACGCCGuAGGGCAUG-CCGucGCGcGCg -3'
miRNA:   3'- gcUGCGGC-UCCCGUACuGGU--CGCaCG- -5'
24074 3' -58.6 NC_005262.1 + 30995 0.71 0.301553
Target:  5'- cCGACGUCGAacGCgAUGGCCGGCGcGCc -3'
miRNA:   3'- -GCUGCGGCUccCG-UACUGGUCGCaCG- -5'
24074 3' -58.6 NC_005262.1 + 58814 0.72 0.287362
Target:  5'- uCGGCGCCGugaaGGCAUGGCUgcuGCG-GCg -3'
miRNA:   3'- -GCUGCGGCuc--CCGUACUGGu--CGCaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.