miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24074 3' -58.6 NC_005262.1 + 25 0.73 0.254195
Target:  5'- gCGGCGUCGAuGGCAUGcuCCAGUGccUGCa -3'
miRNA:   3'- -GCUGCGGCUcCCGUACu-GGUCGC--ACG- -5'
24074 3' -58.6 NC_005262.1 + 454 0.66 0.563191
Target:  5'- uGAucCGCCuuGAGGGCGUuGACCucGGCGacgcgGCg -3'
miRNA:   3'- gCU--GCGG--CUCCCGUA-CUGG--UCGCa----CG- -5'
24074 3' -58.6 NC_005262.1 + 505 0.67 0.532153
Target:  5'- uCGACGCCGAGccaGCAgccGGCCgucaagcaGGCG-GCg -3'
miRNA:   3'- -GCUGCGGCUCc--CGUa--CUGG--------UCGCaCG- -5'
24074 3' -58.6 NC_005262.1 + 771 0.68 0.481916
Target:  5'- uCGuCGCCGAgguucGGGCGuggcuUGACCGGCa-GCa -3'
miRNA:   3'- -GCuGCGGCU-----CCCGU-----ACUGGUCGcaCG- -5'
24074 3' -58.6 NC_005262.1 + 2021 0.67 0.515851
Target:  5'- aCGGCGCugcuucgugcugcuCGAcgGGGCGcGuagcgagcaucccaGCCAGCGUGCg -3'
miRNA:   3'- -GCUGCG--------------GCU--CCCGUaC--------------UGGUCGCACG- -5'
24074 3' -58.6 NC_005262.1 + 2661 0.74 0.197333
Target:  5'- gCGGCGCCGGGcGGCGuccUGGCCGcCGUaGCa -3'
miRNA:   3'- -GCUGCGGCUC-CCGU---ACUGGUcGCA-CG- -5'
24074 3' -58.6 NC_005262.1 + 3237 0.68 0.462465
Target:  5'- -cGCGCCGAGcGCcgGcguCAGCGUGCc -3'
miRNA:   3'- gcUGCGGCUCcCGuaCug-GUCGCACG- -5'
24074 3' -58.6 NC_005262.1 + 4813 0.7 0.33937
Target:  5'- aCGGCGCgGGaGGCGUGaggccGCCGGCGgccgGCu -3'
miRNA:   3'- -GCUGCGgCUcCCGUAC-----UGGUCGCa---CG- -5'
24074 3' -58.6 NC_005262.1 + 5048 0.69 0.406746
Target:  5'- cCGGCGCCuGAucggcGGGCA-GGCCcGCGgcgGCg -3'
miRNA:   3'- -GCUGCGG-CU-----CCCGUaCUGGuCGCa--CG- -5'
24074 3' -58.6 NC_005262.1 + 5090 0.7 0.355431
Target:  5'- -aGCGCCucGGGCAUGccGCCAGCuuguUGCg -3'
miRNA:   3'- gcUGCGGcuCCCGUAC--UGGUCGc---ACG- -5'
24074 3' -58.6 NC_005262.1 + 5180 0.67 0.521941
Target:  5'- cCGGCGUCGcGGGCGcgggcgcGGCCGGCGcgaccgaggGCg -3'
miRNA:   3'- -GCUGCGGCuCCCGUa------CUGGUCGCa--------CG- -5'
24074 3' -58.6 NC_005262.1 + 5346 0.66 0.602086
Target:  5'- uGACGCCGcgcacgccugccGGGGCGUccuugacgggcaggGACgCGGcCGUGUc -3'
miRNA:   3'- gCUGCGGC------------UCCCGUA--------------CUG-GUC-GCACG- -5'
24074 3' -58.6 NC_005262.1 + 5440 0.66 0.61585
Target:  5'- uCGAUGucCCGGcGcGGCAUGACCucGCG-GCg -3'
miRNA:   3'- -GCUGC--GGCU-C-CCGUACUGGu-CGCaCG- -5'
24074 3' -58.6 NC_005262.1 + 11696 0.68 0.491789
Target:  5'- gCGuCGCCGAGGucguccguCAUGGCCuuGGCGUauGCg -3'
miRNA:   3'- -GCuGCGGCUCCc-------GUACUGG--UCGCA--CG- -5'
24074 3' -58.6 NC_005262.1 + 12664 0.66 0.573648
Target:  5'- aCGGCGUCGAGcGCcuugucGACCGGCGcGUc -3'
miRNA:   3'- -GCUGCGGCUCcCGua----CUGGUCGCaCG- -5'
24074 3' -58.6 NC_005262.1 + 13768 0.7 0.380511
Target:  5'- cCGGCGCCGGcucGGGCuucacuucgGUGggcGCCGGCGcgGCu -3'
miRNA:   3'- -GCUGCGGCU---CCCG---------UAC---UGGUCGCa-CG- -5'
24074 3' -58.6 NC_005262.1 + 13979 0.7 0.350557
Target:  5'- gGGgGCCGGuGGGCGaacgcUGGuuguguguauggaccCCAGCGUGCa -3'
miRNA:   3'- gCUgCGGCU-CCCGU-----ACU---------------GGUCGCACG- -5'
24074 3' -58.6 NC_005262.1 + 14582 0.68 0.481916
Target:  5'- gCGcCGCCGAGGccGCccucGGCCAGCaUGCc -3'
miRNA:   3'- -GCuGCGGCUCC--CGua--CUGGUCGcACG- -5'
24074 3' -58.6 NC_005262.1 + 15387 0.67 0.511806
Target:  5'- --uCGCCGGGGGUuUGACUgauGCGcGCu -3'
miRNA:   3'- gcuGCGGCUCCCGuACUGGu--CGCaCG- -5'
24074 3' -58.6 NC_005262.1 + 15719 0.68 0.491789
Target:  5'- uCGGCGCCGGGcGGCucguCgCGGCagGUGCg -3'
miRNA:   3'- -GCUGCGGCUC-CCGuacuG-GUCG--CACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.