miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24074 3' -58.6 NC_005262.1 + 15752 0.68 0.443436
Target:  5'- cCGACGCgcuUGcGGGCGcGGCCGGC-UGCu -3'
miRNA:   3'- -GCUGCG---GCuCCCGUaCUGGUCGcACG- -5'
24074 3' -58.6 NC_005262.1 + 16043 0.69 0.41574
Target:  5'- gCGAUGCCGGGuucGCcgcGGCCGGCG-GCg -3'
miRNA:   3'- -GCUGCGGCUCc--CGua-CUGGUCGCaCG- -5'
24074 3' -58.6 NC_005262.1 + 17112 0.69 0.41574
Target:  5'- gCGGCGCUGAcugcaucggcGGGCGUcgguGCCGGCGccaUGCu -3'
miRNA:   3'- -GCUGCGGCU----------CCCGUAc---UGGUCGC---ACG- -5'
24074 3' -58.6 NC_005262.1 + 17233 0.68 0.462465
Target:  5'- uCGugGUCGucguGGGCGUcgcgggagcggcGGCCGGCGccGCg -3'
miRNA:   3'- -GCugCGGCu---CCCGUA------------CUGGUCGCa-CG- -5'
24074 3' -58.6 NC_005262.1 + 17318 0.69 0.434087
Target:  5'- -cAUGUCGAcGGGCugcgucGUGGCCGGCGcgGCa -3'
miRNA:   3'- gcUGCGGCU-CCCG------UACUGGUCGCa-CG- -5'
24074 3' -58.6 NC_005262.1 + 18109 0.66 0.573648
Target:  5'- cCGGCGUCGAcaauugggaGGGUAUcGACgaAGCGcUGCg -3'
miRNA:   3'- -GCUGCGGCU---------CCCGUA-CUGg-UCGC-ACG- -5'
24074 3' -58.6 NC_005262.1 + 22657 0.66 0.61585
Target:  5'- aGAgGCgGAauggcuucaGGGCGcgGACCAGUGcGCa -3'
miRNA:   3'- gCUgCGgCU---------CCCGUa-CUGGUCGCaCG- -5'
24074 3' -58.6 NC_005262.1 + 22705 0.8 0.08137
Target:  5'- aCGugGCCGGcGGCGuUGACgAGCGUGCc -3'
miRNA:   3'- -GCugCGGCUcCCGU-ACUGgUCGCACG- -5'
24074 3' -58.6 NC_005262.1 + 22888 0.66 0.60526
Target:  5'- uGACGgCGAGGGCGuaguacggUGGUCGGUucucguGUGCg -3'
miRNA:   3'- gCUGCgGCUCCCGU--------ACUGGUCG------CACG- -5'
24074 3' -58.6 NC_005262.1 + 23810 0.68 0.488817
Target:  5'- gCGAUGUgCGAGGGguUGgucaucucaugggcGCCGGCGaGCg -3'
miRNA:   3'- -GCUGCG-GCUCCCguAC--------------UGGUCGCaCG- -5'
24074 3' -58.6 NC_005262.1 + 24731 0.67 0.501754
Target:  5'- -cGCGCUGGcGcGCGcGAUCGGCGUGCg -3'
miRNA:   3'- gcUGCGGCUcC-CGUaCUGGUCGCACG- -5'
24074 3' -58.6 NC_005262.1 + 24920 0.74 0.218619
Target:  5'- gGACGCCGA-GGCAUGGCgGGa-UGCg -3'
miRNA:   3'- gCUGCGGCUcCCGUACUGgUCgcACG- -5'
24074 3' -58.6 NC_005262.1 + 26333 0.71 0.323841
Target:  5'- aGAUGCuCGAGGaGCugAUGcCgGGCGUGCg -3'
miRNA:   3'- gCUGCG-GCUCC-CG--UACuGgUCGCACG- -5'
24074 3' -58.6 NC_005262.1 + 28544 0.66 0.563191
Target:  5'- cCGuuCGCCGGGGGCGc--CCAGCcgcUGCc -3'
miRNA:   3'- -GCu-GCGGCUCCCGUacuGGUCGc--ACG- -5'
24074 3' -58.6 NC_005262.1 + 29150 0.72 0.260568
Target:  5'- aCGAgGCCGAGuGGCGcgcGACCAuGCGUcagGCg -3'
miRNA:   3'- -GCUgCGGCUC-CCGUa--CUGGU-CGCA---CG- -5'
24074 3' -58.6 NC_005262.1 + 30038 0.66 0.573648
Target:  5'- aCGACGCagcaGcGGGCAaGACCGaCGaUGCu -3'
miRNA:   3'- -GCUGCGg---CuCCCGUaCUGGUcGC-ACG- -5'
24074 3' -58.6 NC_005262.1 + 30900 0.69 0.41574
Target:  5'- gCGACGCCGccGGCuUGGCCGacguucgacGCG-GCg -3'
miRNA:   3'- -GCUGCGGCucCCGuACUGGU---------CGCaCG- -5'
24074 3' -58.6 NC_005262.1 + 30995 0.71 0.301553
Target:  5'- cCGACGUCGAacGCgAUGGCCGGCGcGCc -3'
miRNA:   3'- -GCUGCGGCUccCG-UACUGGUCGCaCG- -5'
24074 3' -58.6 NC_005262.1 + 34005 0.67 0.500753
Target:  5'- gGGCGCgGAcGGCGUGacGCCGGgccgcauCGUGCg -3'
miRNA:   3'- gCUGCGgCUcCCGUAC--UGGUC-------GCACG- -5'
24074 3' -58.6 NC_005262.1 + 35217 0.71 0.301553
Target:  5'- -cACGCCGuAGGGCAUG-CCGucGCGcGCg -3'
miRNA:   3'- gcUGCGGC-UCCCGUACuGGU--CGCaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.