miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24074 3' -58.6 NC_005262.1 + 63576 0.67 0.521941
Target:  5'- uGACGCCGuacGGCAUGcuCguGCGcGCg -3'
miRNA:   3'- gCUGCGGCuc-CCGUACu-GguCGCaCG- -5'
24074 3' -58.6 NC_005262.1 + 60498 0.66 0.61585
Target:  5'- aGACGCCGGGccgcgcGGCGcaGGCCgccaagAGCGUGa -3'
miRNA:   3'- gCUGCGGCUC------CCGUa-CUGG------UCGCACg -5'
24074 3' -58.6 NC_005262.1 + 60117 0.68 0.452896
Target:  5'- uCGG-GCaCGAGGGC---GCCAGCGUcGCg -3'
miRNA:   3'- -GCUgCG-GCUCCCGuacUGGUCGCA-CG- -5'
24074 3' -58.6 NC_005262.1 + 59312 0.67 0.552784
Target:  5'- gGACGgCGGcucGGGCAUGACgaCGGCugaUGCg -3'
miRNA:   3'- gCUGCgGCU---CCCGUACUG--GUCGc--ACG- -5'
24074 3' -58.6 NC_005262.1 + 59124 0.67 0.551747
Target:  5'- -cGCGCCGAGgcgaaccGGCcgGGCC-GCGUcGCc -3'
miRNA:   3'- gcUGCGGCUC-------CCGuaCUGGuCGCA-CG- -5'
24074 3' -58.6 NC_005262.1 + 58814 0.72 0.287362
Target:  5'- uCGGCGCCGugaaGGCAUGGCUgcuGCG-GCg -3'
miRNA:   3'- -GCUGCGGCuc--CCGUACUGGu--CGCaCG- -5'
24074 3' -58.6 NC_005262.1 + 57918 0.8 0.08694
Target:  5'- uCGACGUCGAucgcuucauccgcacGGuGC-UGACCAGCGUGCa -3'
miRNA:   3'- -GCUGCGGCU---------------CC-CGuACUGGUCGCACG- -5'
24074 3' -58.6 NC_005262.1 + 57750 0.75 0.168805
Target:  5'- aGGCGCuCGAGGGCAUuGCgCgcaauGGCGUGCu -3'
miRNA:   3'- gCUGCG-GCUCCCGUAcUG-G-----UCGCACG- -5'
24074 3' -58.6 NC_005262.1 + 57481 0.69 0.41574
Target:  5'- gGGCGCCGAcgaGaGGC--GGCCGGCGaGCg -3'
miRNA:   3'- gCUGCGGCU---C-CCGuaCUGGUCGCaCG- -5'
24074 3' -58.6 NC_005262.1 + 56425 0.72 0.26707
Target:  5'- cCGACauGCgCGAGGGCAaaaagcgcgugcUGAUCGGCG-GCa -3'
miRNA:   3'- -GCUG--CG-GCUCCCGU------------ACUGGUCGCaCG- -5'
24074 3' -58.6 NC_005262.1 + 54642 0.67 0.521941
Target:  5'- aGGCGCCGGGugauccGCAUuccGACCGGCccgGCg -3'
miRNA:   3'- gCUGCGGCUCc-----CGUA---CUGGUCGca-CG- -5'
24074 3' -58.6 NC_005262.1 + 52942 0.68 0.443436
Target:  5'- -uGCGCCGccuGGGCuucGCCGGCG-GCa -3'
miRNA:   3'- gcUGCGGCu--CCCGuacUGGUCGCaCG- -5'
24074 3' -58.6 NC_005262.1 + 52178 1.12 0.000397
Target:  5'- uCGACGCCGAGGGCAUGACCAGCGUGCa -3'
miRNA:   3'- -GCUGCGGCUCCCGUACUGGUCGCACG- -5'
24074 3' -58.6 NC_005262.1 + 51380 0.7 0.33937
Target:  5'- gCGACGCCGgccaAGGccGCGccUGACC-GUGUGCa -3'
miRNA:   3'- -GCUGCGGC----UCC--CGU--ACUGGuCGCACG- -5'
24074 3' -58.6 NC_005262.1 + 50800 0.72 0.280466
Target:  5'- aGGuCGCCGAGGGCAUGG--AGCGcuucGCg -3'
miRNA:   3'- gCU-GCGGCUCCCGUACUggUCGCa---CG- -5'
24074 3' -58.6 NC_005262.1 + 50415 0.68 0.443436
Target:  5'- -aGCGCCGcGGaGCGcgagGGCC-GCGUGCa -3'
miRNA:   3'- gcUGCGGCuCC-CGUa---CUGGuCGCACG- -5'
24074 3' -58.6 NC_005262.1 + 50055 0.66 0.563191
Target:  5'- gCGAgGCUGAauGCcUGGCaCGGCGUGCc -3'
miRNA:   3'- -GCUgCGGCUccCGuACUG-GUCGCACG- -5'
24074 3' -58.6 NC_005262.1 + 49712 0.66 0.563191
Target:  5'- aCGGCguGCCGGGcGGCGa-ACCGGCG-GCc -3'
miRNA:   3'- -GCUG--CGGCUC-CCGUacUGGUCGCaCG- -5'
24074 3' -58.6 NC_005262.1 + 49513 0.67 0.511806
Target:  5'- gCGAuCGCCGAGGGCcUGcucgaggagcuGCCgcagAGCGcGCu -3'
miRNA:   3'- -GCU-GCGGCUCCCGuAC-----------UGG----UCGCaCG- -5'
24074 3' -58.6 NC_005262.1 + 49322 0.71 0.301553
Target:  5'- aGGCGC--AGGGCAUGACCgacgagcaGGCGcGCg -3'
miRNA:   3'- gCUGCGgcUCCCGUACUGG--------UCGCaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.