miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24074 3' -58.6 NC_005262.1 + 60117 0.68 0.452896
Target:  5'- uCGG-GCaCGAGGGC---GCCAGCGUcGCg -3'
miRNA:   3'- -GCUgCG-GCUCCCGuacUGGUCGCA-CG- -5'
24074 3' -58.6 NC_005262.1 + 26333 0.71 0.323841
Target:  5'- aGAUGCuCGAGGaGCugAUGcCgGGCGUGCg -3'
miRNA:   3'- gCUGCG-GCUCC-CG--UACuGgUCGCACG- -5'
24074 3' -58.6 NC_005262.1 + 51380 0.7 0.33937
Target:  5'- gCGACGCCGgccaAGGccGCGccUGACC-GUGUGCa -3'
miRNA:   3'- -GCUGCGGC----UCC--CGU--ACUGGuCGCACG- -5'
24074 3' -58.6 NC_005262.1 + 13979 0.7 0.350557
Target:  5'- gGGgGCCGGuGGGCGaacgcUGGuuguguguauggaccCCAGCGUGCa -3'
miRNA:   3'- gCUgCGGCU-CCCGU-----ACU---------------GGUCGCACG- -5'
24074 3' -58.6 NC_005262.1 + 5048 0.69 0.406746
Target:  5'- cCGGCGCCuGAucggcGGGCA-GGCCcGCGgcgGCg -3'
miRNA:   3'- -GCUGCGG-CU-----CCCGUaCUGGuCGCa--CG- -5'
24074 3' -58.6 NC_005262.1 + 41167 0.69 0.424854
Target:  5'- -cGCGCagGAGGGCAccGCCGcgaucGCGUGCg -3'
miRNA:   3'- gcUGCGg-CUCCCGUacUGGU-----CGCACG- -5'
24074 3' -58.6 NC_005262.1 + 52942 0.68 0.443436
Target:  5'- -uGCGCCGccuGGGCuucGCCGGCG-GCa -3'
miRNA:   3'- gcUGCGGCu--CCCGuacUGGUCGCaCG- -5'
24074 3' -58.6 NC_005262.1 + 49205 0.68 0.443436
Target:  5'- cCGGCaugcugGCCGAGGGCGgccUCGGCG-GCg -3'
miRNA:   3'- -GCUG------CGGCUCCCGUacuGGUCGCaCG- -5'
24074 3' -58.6 NC_005262.1 + 50415 0.68 0.443436
Target:  5'- -aGCGCCGcGGaGCGcgagGGCC-GCGUGCa -3'
miRNA:   3'- gcUGCGGCuCC-CGUa---CUGGuCGCACG- -5'
24074 3' -58.6 NC_005262.1 + 49322 0.71 0.301553
Target:  5'- aGGCGC--AGGGCAUGACCgacgagcaGGCGcGCg -3'
miRNA:   3'- gCUGCGgcUCCCGUACUGG--------UCGCaCG- -5'
24074 3' -58.6 NC_005262.1 + 58814 0.72 0.287362
Target:  5'- uCGGCGCCGugaaGGCAUGGCUgcuGCG-GCg -3'
miRNA:   3'- -GCUGCGGCuc--CCGUACUGGu--CGCaCG- -5'
24074 3' -58.6 NC_005262.1 + 50800 0.72 0.280466
Target:  5'- aGGuCGCCGAGGGCAUGG--AGCGcuucGCg -3'
miRNA:   3'- gCU-GCGGCUCCCGUACUggUCGCa---CG- -5'
24074 3' -58.6 NC_005262.1 + 57750 0.75 0.168805
Target:  5'- aGGCGCuCGAGGGCAUuGCgCgcaauGGCGUGCu -3'
miRNA:   3'- gCUGCG-GCUCCCGUAcUG-G-----UCGCACG- -5'
24074 3' -58.6 NC_005262.1 + 2661 0.74 0.197333
Target:  5'- gCGGCGCCGGGcGGCGuccUGGCCGcCGUaGCa -3'
miRNA:   3'- -GCUGCGGCUC-CCGU---ACUGGUcGCA-CG- -5'
24074 3' -58.6 NC_005262.1 + 24920 0.74 0.218619
Target:  5'- gGACGCCGA-GGCAUGGCgGGa-UGCg -3'
miRNA:   3'- gCUGCGGCUcCCGUACUGgUCgcACG- -5'
24074 3' -58.6 NC_005262.1 + 25 0.73 0.254195
Target:  5'- gCGGCGUCGAuGGCAUGcuCCAGUGccUGCa -3'
miRNA:   3'- -GCUGCGGCUcCCGUACu-GGUCGC--ACG- -5'
24074 3' -58.6 NC_005262.1 + 48431 0.72 0.260568
Target:  5'- aCGACGgaCGGcGGCAUGACCAcGCGcGCg -3'
miRNA:   3'- -GCUGCg-GCUcCCGUACUGGU-CGCaCG- -5'
24074 3' -58.6 NC_005262.1 + 29150 0.72 0.260568
Target:  5'- aCGAgGCCGAGuGGCGcgcGACCAuGCGUcagGCg -3'
miRNA:   3'- -GCUgCGGCUC-CCGUa--CUGGU-CGCA---CG- -5'
24074 3' -58.6 NC_005262.1 + 56425 0.72 0.26707
Target:  5'- cCGACauGCgCGAGGGCAaaaagcgcgugcUGAUCGGCG-GCa -3'
miRNA:   3'- -GCUG--CG-GCUCCCGU------------ACUGGUCGCaCG- -5'
24074 3' -58.6 NC_005262.1 + 45767 0.72 0.273702
Target:  5'- gCGACGCCGAucGGCAUcgcggcgaagGGCggCGGCGUGCu -3'
miRNA:   3'- -GCUGCGGCUc-CCGUA----------CUG--GUCGCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.