miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24074 3' -58.6 NC_005262.1 + 41534 0.66 0.61585
Target:  5'- gGACGUauggCGAcGGCGUGaugcgcaggccgGCCGGCGUGg -3'
miRNA:   3'- gCUGCG----GCUcCCGUAC------------UGGUCGCACg -5'
24074 3' -58.6 NC_005262.1 + 39603 0.69 0.434087
Target:  5'- gCGGCuGCCGccucGGGCGUGaacucGCCggggaacgugcaGGCGUGCg -3'
miRNA:   3'- -GCUG-CGGCu---CCCGUAC-----UGG------------UCGCACG- -5'
24074 3' -58.6 NC_005262.1 + 57481 0.69 0.41574
Target:  5'- gGGCGCCGAcgaGaGGC--GGCCGGCGaGCg -3'
miRNA:   3'- gCUGCGGCU---C-CCGuaCUGGUCGCaCG- -5'
24074 3' -58.6 NC_005262.1 + 22705 0.8 0.08137
Target:  5'- aCGugGCCGGcGGCGuUGACgAGCGUGCc -3'
miRNA:   3'- -GCugCGGCUcCCGU-ACUGgUCGCACG- -5'
24074 3' -58.6 NC_005262.1 + 50055 0.66 0.563191
Target:  5'- gCGAgGCUGAauGCcUGGCaCGGCGUGCc -3'
miRNA:   3'- -GCUgCGGCUccCGuACUG-GUCGCACG- -5'
24074 3' -58.6 NC_005262.1 + 28544 0.66 0.563191
Target:  5'- cCGuuCGCCGGGGGCGc--CCAGCcgcUGCc -3'
miRNA:   3'- -GCu-GCGGCUCCCGUacuGGUCGc--ACG- -5'
24074 3' -58.6 NC_005262.1 + 505 0.67 0.532153
Target:  5'- uCGACGCCGAGccaGCAgccGGCCgucaagcaGGCG-GCg -3'
miRNA:   3'- -GCUGCGGCUCc--CGUa--CUGG--------UCGCaCG- -5'
24074 3' -58.6 NC_005262.1 + 63576 0.67 0.521941
Target:  5'- uGACGCCGuacGGCAUGcuCguGCGcGCg -3'
miRNA:   3'- gCUGCGGCuc-CCGUACu-GguCGCaCG- -5'
24074 3' -58.6 NC_005262.1 + 11696 0.68 0.491789
Target:  5'- gCGuCGCCGAGGucguccguCAUGGCCuuGGCGUauGCg -3'
miRNA:   3'- -GCuGCGGCUCCc-------GUACUGG--UCGCA--CG- -5'
24074 3' -58.6 NC_005262.1 + 15752 0.68 0.443436
Target:  5'- cCGACGCgcuUGcGGGCGcGGCCGGC-UGCu -3'
miRNA:   3'- -GCUGCG---GCuCCCGUaCUGGUCGcACG- -5'
24074 3' -58.6 NC_005262.1 + 14582 0.68 0.481916
Target:  5'- gCGcCGCCGAGGccGCccucGGCCAGCaUGCc -3'
miRNA:   3'- -GCuGCGGCUCC--CGua--CUGGUCGcACG- -5'
24074 3' -58.6 NC_005262.1 + 15719 0.68 0.491789
Target:  5'- uCGGCGCCGGGcGGCucguCgCGGCagGUGCg -3'
miRNA:   3'- -GCUGCGGCUC-CCGuacuG-GUCG--CACG- -5'
24074 3' -58.6 NC_005262.1 + 22888 0.66 0.60526
Target:  5'- uGACGgCGAGGGCGuaguacggUGGUCGGUucucguGUGCg -3'
miRNA:   3'- gCUGCgGCUCCCGU--------ACUGGUCG------CACG- -5'
24074 3' -58.6 NC_005262.1 + 17233 0.68 0.462465
Target:  5'- uCGugGUCGucguGGGCGUcgcgggagcggcGGCCGGCGccGCg -3'
miRNA:   3'- -GCugCGGCu---CCCGUA------------CUGGUCGCa-CG- -5'
24074 3' -58.6 NC_005262.1 + 5346 0.66 0.602086
Target:  5'- uGACGCCGcgcacgccugccGGGGCGUccuugacgggcaggGACgCGGcCGUGUc -3'
miRNA:   3'- gCUGCGGC------------UCCCGUA--------------CUG-GUC-GCACG- -5'
24074 3' -58.6 NC_005262.1 + 54642 0.67 0.521941
Target:  5'- aGGCGCCGGGugauccGCAUuccGACCGGCccgGCg -3'
miRNA:   3'- gCUGCGGCUCc-----CGUA---CUGGUCGca-CG- -5'
24074 3' -58.6 NC_005262.1 + 3237 0.68 0.462465
Target:  5'- -cGCGCCGAGcGCcgGcguCAGCGUGCc -3'
miRNA:   3'- gcUGCGGCUCcCGuaCug-GUCGCACG- -5'
24074 3' -58.6 NC_005262.1 + 17318 0.69 0.434087
Target:  5'- -cAUGUCGAcGGGCugcgucGUGGCCGGCGcgGCa -3'
miRNA:   3'- gcUGCGGCU-CCCG------UACUGGUCGCa-CG- -5'
24074 3' -58.6 NC_005262.1 + 12664 0.66 0.573648
Target:  5'- aCGGCGUCGAGcGCcuugucGACCGGCGcGUc -3'
miRNA:   3'- -GCUGCGGCUCcCGua----CUGGUCGCaCG- -5'
24074 3' -58.6 NC_005262.1 + 454 0.66 0.563191
Target:  5'- uGAucCGCCuuGAGGGCGUuGACCucGGCGacgcgGCg -3'
miRNA:   3'- gCU--GCGG--CUCCCGUA-CUGG--UCGCa----CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.