miRNA display CGI


Results 61 - 72 of 72 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24074 3' -58.6 NC_005262.1 + 38558 0.67 0.546568
Target:  5'- uCGGCaccGCCGcGGGCcgGAUgaaagaagcaugcuuUGGCGUGCg -3'
miRNA:   3'- -GCUG---CGGCuCCCGuaCUG---------------GUCGCACG- -5'
24074 3' -58.6 NC_005262.1 + 47287 0.67 0.532153
Target:  5'- gGACGCCGc-GGCGaaGAUCGGCGagGCa -3'
miRNA:   3'- gCUGCGGCucCCGUa-CUGGUCGCa-CG- -5'
24074 3' -58.6 NC_005262.1 + 5180 0.67 0.521941
Target:  5'- cCGGCGUCGcGGGCGcgggcgcGGCCGGCGcgaccgaggGCg -3'
miRNA:   3'- -GCUGCGGCuCCCGUa------CUGGUCGCa--------CG- -5'
24074 3' -58.6 NC_005262.1 + 2021 0.67 0.515851
Target:  5'- aCGGCGCugcuucgugcugcuCGAcgGGGCGcGuagcgagcaucccaGCCAGCGUGCg -3'
miRNA:   3'- -GCUGCG--------------GCU--CCCGUaC--------------UGGUCGCACG- -5'
24074 3' -58.6 NC_005262.1 + 15387 0.67 0.511806
Target:  5'- --uCGCCGGGGGUuUGACUgauGCGcGCu -3'
miRNA:   3'- gcuGCGGCUCCCGuACUGGu--CGCaCG- -5'
24074 3' -58.6 NC_005262.1 + 24731 0.67 0.501754
Target:  5'- -cGCGCUGGcGcGCGcGAUCGGCGUGCg -3'
miRNA:   3'- gcUGCGGCUcC-CGUaCUGGUCGCACG- -5'
24074 3' -58.6 NC_005262.1 + 34005 0.67 0.500753
Target:  5'- gGGCGCgGAcGGCGUGacGCCGGgccgcauCGUGCg -3'
miRNA:   3'- gCUGCGgCUcCCGUAC--UGGUC-------GCACG- -5'
24074 3' -58.6 NC_005262.1 + 38509 0.68 0.491789
Target:  5'- uGGCucuCCGGGGGCAcGGCCGGCa--- -3'
miRNA:   3'- gCUGc--GGCUCCCGUaCUGGUCGcacg -5'
24074 3' -58.6 NC_005262.1 + 771 0.68 0.481916
Target:  5'- uCGuCGCCGAgguucGGGCGuggcuUGACCGGCa-GCa -3'
miRNA:   3'- -GCuGCGGCU-----CCCGU-----ACUGGUCGcaCG- -5'
24074 3' -58.6 NC_005262.1 + 44966 0.68 0.462465
Target:  5'- uGGcCGCCGAGGcGag-GGCCGaCGUGCa -3'
miRNA:   3'- gCU-GCGGCUCC-CguaCUGGUcGCACG- -5'
24074 3' -58.6 NC_005262.1 + 60117 0.68 0.452896
Target:  5'- uCGG-GCaCGAGGGC---GCCAGCGUcGCg -3'
miRNA:   3'- -GCUgCG-GCUCCCGuacUGGUCGCA-CG- -5'
24074 3' -58.6 NC_005262.1 + 52178 1.12 0.000397
Target:  5'- uCGACGCCGAGGGCAUGACCAGCGUGCa -3'
miRNA:   3'- -GCUGCGGCUCCCGUACUGGUCGCACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.